%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%Index%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% Introduction

%% Published Papers
%%     1972
%%     1975
%%     1976
%%     ... (according to years)

%% Papers in Press

%% Submitted Papers

%% Papers in Preparation

%% Software Manuals

%% Others

%% Duplicate Entries

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%End of Index%%%%%%%%%%%%%%%%%%%%%%%%%%%%



%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%Introduction%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% This file contains a list of the publications of the Theoretical Biophysics
%% group. To use it with latex/bibtex include lines similar to the following
%% lines in your latex document

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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%End of Introduction%%%%%%%%%%%%%%%%%%%%%%%%%




%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%Published Papers%%%%%%%%%%%%%%%%%%%%%%%%%

%% This section contains the published papers in the group. It is arranged
%% according to the year of the publication. The citing code of the papers,
%% e.g., BIRG75, which consist of four capital letters of the first 
%% authors last name, i.e., Robert R. Birge in this case (exception XU95A, 
%% Xu has only two letters to his name), should be followed by the year
%% in which the paper has been published, and followed possibly by letters
%% A, B, ...  if a group member has more than one publication that year as
%% first author. However in some cases, the year in the citing code was
%% assigned according to the year in which the paper was submitted. The year
%% in which the paper appeared in the journal might be later than the one of
%% submission. We usually do not change the citing code when we obtained
%% updated information in order to keep the consistency, since many papers
%% and proposals have already referred the paper according to this citing code.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


%%%%%%%%%%%1972%%%%%%%%%%


@article{SCHU72,
  author={Klaus Schulten and Martin Karplus},
  title={On the Origin of a Low-Lying Forbidden Transition in Polyenes and Related Molecules},
  journal=CPL,
  year={1972},
  volume={14},
  number=3,
  pages={305--309},
  tbstatus={pub},
  tbreference={1},
  annote={June 1}
}


%%%%%%%%%%%1975%%%%%%%%%%


@article{BIRG75,
  author={Robert R. Birge and Klaus Schulten and Martin Karplus},
  title={Possible Influence of a Low-Lying ``Covalent'' Excited State on the Absorption Spectrum and Photoisomerization of 11-cis Retinal},
  journal=CPL,
  year={1975},
  volume={31},
  number=3,
  pages={451--454},
  tbstatus={pub},
  tbreference={2}
}

@article{SCHU75,
  author={Klaus Schulten and Roy G. Gordon},
  title={Exact Recursive Evaluation of $3j$- and $6j$-Coefficients for Quantum-Mechanical Coupling of Angular Momenta},
  journal=JMP,
  year={1975},
  volume={16},
  pages={1961--1970},
  tbstatus={pub},
  tbreference={3}
}

@article{SCHU75A,
  author={Klaus Schulten and Roy G. Gordon},
  title={Semiclassical Approximation to $3j$- and $6j$-Coefficients for Quantum-Mechanical Coupling of Angular Momenta},
  journal=JMP,
  year={1975},
  volume={16},
  pages={1971--1988},
  tbstatus={pub},
  tbreference={4}
}


%%%%%%%%%%%1976%%%%%%%%%%


@article{SCHU76,
  author={Klaus Schulten and I. Ohmine and Martin Karplus},
  title={Correlation Effects in the Spectra of Polyenes},
  journal=JCP,
  year={1976},
  volume={64},
  pages={4422--4441},
  tbstatus={pub},
  tbreference={5}
}

@article{SCHU76A,
  author={Klaus Schulten and Roy G. Gordon},
  title={Quantum Theory of Angular Momentum Coupling in Reactive Collisions},
  journal=JCP,
  year={1976},
  volume={64},
  pages={2918--2938},
  tbstatus={pub},
  tbreference={6}
}

@article{SCHU76B,
  author={Klaus Schulten and Roy G. Gordon},
  title={Recursive Evaluation of $3j$- and $6j$-Coefficients},
  journal=CPC,
  year={1976},
  volume={11},
  pages={269--278},
  tbstatus={pub},
  tbreference={7}
}

@article{SCHU76C,
  author= {Klaus Schulten and H. Staerk and Albert Weller and Hans-Joachim Werner and B. Nickel},
  title={Magnetic Field Dependence of the Geminate Recombination of Radical Ion Pairs in Polar Solvents},
  journal=ZPC,
  year={1976},
  volume={NF101},
  pages={371--390},
  tbstatus={pub},
  tbreference={8}
}


%%%%%%%%%%%1977%%%%%%%%%%


@article{SCHU77,
  author={Klaus Schulten},
  title={Quantum Mechanical Propensity Rules for the Transfer of Angular Momentum in Three-Atom Reactions},
  journal=BBG,
  year={1977},
  volume={81},
  pages={166--168},
  tbstatus={pub},
  tbreference={9}
}

@article{SCHU77A,
  author={Zan Schulten and Klaus Schulten},
  title={The Generation, Diffusion, Spin Motion, and Recombination of Radical Pairs in Solution in the Nanosecond Time Domain},
  journal=JCP,
  year={1977},
  volume={66},
  pages={4616--4634},
  tbstatus={pub},
  tbreference={10}
}

@article{WERN77,
  author={Hans-Joachim Werner and Zan Schulten and Klaus Schulten},
  title={Theory of the Magnetic  Field Modulated Geminate Recombination of Radical Ion Pairs in Polar Solvents: Application to the Pyrene-{N,N}-Dimethylaniline System},
  journal=JCP,
  year={1977},
  volume={67},
  pages={646--663},
  tbstatus={pub},
  tbreference={11}
}


%%%%%%%%%%%1978%%%%%%%%%%


@article{OHMI78,
  author={I. Ohmine and Martin Karplus and Klaus Schulten},
  title={Renormalized Configuration Interaction Method for Electron Correlation in the Excited States of Polyenes},
  journal=JCP,
  year={1978},
  volume={68},
  number=5,
  pages={2298--2318},
  tbstatus={pub},
  tbreference={12},
  annote={March 1}
}

@article{SCHU78,
  author={Klaus Schulten and Paul Tavan},
  title={A Mechanism for the Light-Driven Proton Pump of\begin{em} {H}alobacterium halobium\end{em}},
  journal=NAT,
  year={1978},
  volume={272},
  pages={85--86},
  tbstatus={pub},
  tbreference={13}
}

@article{WERN78,
  author={Hans-Joachim Werner and Klaus Schulten and Albert Weller},
  title={Electron Transfer and Spin Exchange Contributing to the Magnetic Field Dependence of the Primary Photochemical Reaction of Bacterial Photosynthesis},
  journal=BBA,
  year={1978},
  volume={502},
  pages={255--268},
  tbstatus={pub},
  tbreference={14}
}

@article{TAVA78,
  author={Paul Tavan and Klaus Schulten},
  title={The `Phantom' Photochemical Singlet State of Stilbene and its Diphenylpolyene Relative},
  journal=CPL,
  year={1978},
  volume={56},
  number=2,
  annote={june 1},
  pages={200--204},
  tbstatus={pub},
  tbreference={15}
}

@article{SCHU78D,
  author={Klaus Schulten and Peter G. Wolynes},
  title={Semiclassical Description of Electron Spin Motion in Radicals Including the Effect of Electron Hopping},
  journal=JCP,
  year={1978},
  volume={68},
  pages={3292--3297},
  tbstatus={pub},
  tbreference={16}
}

@article{SCHU78A,
  author={Klaus Schulten and Albert Weller},
  title={Exploring Fast Electron Transfer Processes by Magnetic Fields},
  journal=BJ,
  year={1978},
  volume={24},
  pages={295--305},
  tbstatus={pub},
  tbreference={17}
}

@incollection{SCHU78B,
  author={Klaus Schulten},
  title={An Isomerization Model for the Photocycle of Bacteriorhodopsin},
  booktitle={Energetics and Structure of Halophilic Organisms},
  editor={S. R. Caplan and M. Ginzburg},
  publisher={Elsevier},
  year={1978},
  pages={331--334},
  tbstatus={pub},
  tbreference={18}
}

@article{SCHU78C,
  author={Klaus Schulten and Charles E. Swenberg and Albert Weller},
  title={A Biomagnetic Sensory Mechanism Based on Magnetic Field Mo\-dulated Coherent Electron Spin Motion},
  journal=ZPC,
  volume={NF111},
  year={1978},
  pages={1--5},
  tbstatus={pub},
  tbreference={19}
}


%%%%%%%%%%%1979%%%%%%%%%%


@article{ORLA79,
  author={G. Orlandi and Klaus Schulten},
  title={Coupling of Stereochemistry and Proton Donor--Acceptor Properties of a {Schiff} Base: A Model of a Light-Driven Proton Pump},
  journal=CPL,
  volume={64},
  year={1979},
  pages={370--374},
  tbstatus={pub},
  tbreference={20}
}

@article{TAVA79,
  author={Paul Tavan and Klaus Schulten},
  title={The {$2^1A_g$ -- $1^1B_u$} Energy Gap in the Polyenes:  An Extended Configuration Interaction Study},
  journal=JCP,
  volume={70},
  number=12,
  annote={June 15},
  year={1979},
  pages={5407--5413},
  tbstatus={pub},
  tbreference={21}
}

@article{TAVA79A,
  author={Paul Tavan and Klaus Schulten},
  title={Correlation Effects in the Spectra of Polyacenes},
  journal=JCP,
  volume={70},
  number=12,
  annote={jun 15},
  year={1979},
  pages={5414--5421},
  tbstatus={pub},
  tbreference={22}
}

@article{SCHU79,
  author={Klaus Schulten and Irving R. Epstein},
  title={Recombination of Radical Pairs in High Magnetic Fields: A Path Integral--{Monte Carlo} Treatment},
  journal=JCP,
  volume={71},
  year={1979},
  pages={309--316},
  tbstatus={pub},
  tbreference={23}
}

@article{KNAP79,
  author={Ernst-Walter Knapp and Klaus Schulten},
  title={Magnetic Field Effect on the Hyperfine-Induced Electron Spin Motion in Radicals Undergoing Diamagnetic--Paramagnetic Exchange},
  journal=JCP,
  volume={71},
  year={1979},
  pages={1878--1883},
  tbstatus={pub},
  tbreference={24}
}


%%%%%%%%%%%1980%%%%%%%%%%


@article{KNAP80,
  author={Ernst-Walter Knapp and Klaus Schulten and Zan Schulten},
  title={Proton Conduction in Linear Hydrogen-Bonded Systems},
  journal=CP,
  volume={46},
  year={1980},
  pages={215--229},
  tbstatus={pub},
  tbreference={25}
}

@article{SCHU80,
  author={Klaus Schulten and Zan Schulten and Attila Szabo},
  title={Reactions Governed by a Binomial Redistribution Process.  {T}he {E}hrenfest Urn Problem},
  journal=PHY,
  volume={100A},
  year=1980,
  pages={599--614},
  tbstatus={pub},
  tbreference={26}
}

@article{TAVA80,
  author={Paul Tavan and Klaus Schulten},
  title={An Efficient Approach to {CI}:  General Matrix Element Formulas for Spin-Coupled Particle-Hole Excitations},
  journal=JCP,
  volume=72,
  number=6,
  annote={mar 15},
  year=1980,
  pages={3547--3576},
  tbstatus={pub},
  tbreference={27}
}

@article{SZAB80,
  author={Attila Szabo and Klaus Schulten and Zan Schulten},
  title={First Passage Time Approach to Diffusion Controlled Reactions},
  journal=JCP,
  volume=72,
  year=1980,
  pages={4350--4357},
  tbstatus={pub},
  tbreference={28}
}

@article{DINU80,
  author={Uri Dinur and Barry Honig and Klaus Schulten},
  title={On the Nature of Excited Electronic States in Cyanine Dyes: Implications for Visual Pigment Spectra},
  journal=CPL,
  volume=72,
  number=3,
  annote={jun 15},
  pages={493--497},
  year=1980,
  tbstatus={pub},
  tbreference={29}
}

@article{SCHU80A,
  author={Klaus Schulten and Uri Dinur and Barry Honig},
  title={The Spectra of Carbonium Ions, Cyanine Dyes, and Protonated {Schiff} Base Polyenes},
  journal=JCP,
  volume=73,
  number=8,
  annote={15 Oct},
  year=1980,
  pages={3927--3935},
  tbstatus={pub},
  tbreference={30}
}


%%%%%%%%%%%1981%%%%%%%%%%


@article{SCHU81,
  author={Klaus Schulten and Zan Schulten and Attila Szabo},
  title={Dynamics of Reactions Involving Diffusive Barrier Crossing},
  journal=JCP,
  year=1981,
  volume=74,
  pages={4426--4432},
  tbstatus={pub},
  tbreference={31}
}

@article{PETE81,
  author={Reiner Peters and Axel Br\"unger and Klaus Schulten},
  title={Continuous Fluorescence Microphotolysis: A Sensitive Method for Study of Diffusion Processes in Single Cells},
  journal=PNAS,
  volume=78,
  pages={962--966},
  year=1981,
  tbstatus={pub},
  tbreference={32}
}

@article{LAMM81,
  author={Gene Lamm and Klaus Schulten},
  title={Extended {B}rownian Dynamics Approach to Diffusion-Controlled Processes},
  journal=JCP,
  volume=75,
  pages={365--371},
  year=1981,
  tbstatus={pub},
  tbreference={33}
}


%%%%%%%%%%%1982%%%%%%%%%%


@incollection{SCHU82,
  author={Klaus Schulten},
  title={Magnetic Field Effects in Chemistry and Biology},
  booktitle={Fest\-k\"orper\-probleme},
  publisher={Vieweg}, 
  address={Braunschweig},
  volume={22},
  year=1982,
  editor={J. Treusch},
  pages={61--83},
  tbstatus={pub},
  tbreference={34}
}


@incollection{HUDS82,
  author={Bruce S. Hudson and Bryan E. Kohler and Klaus Schulten},
  title={Linear Polyene Electronic Structure and Potential
Surfaces},
  booktitle={Excited States},
  publisher={Academic Press},
  address={New York},
  volume=6,
  year=1982,
  editor={Edward C. Lim},
  pages={1--95},
  tbstatus={pub},
  tbreference={35}
}


%%%%%%%%%%%1983%%%%%%%%%%


@article{LAMM83,
  author={Gene Lamm and Klaus Schulten},
  title={Extended {B}rownian Dynamics: {II}.\ {R}eactive, Nonlinear Diffusion},
  journal=JCP,
  volume=78,
  year=1983,
  pages={2713--2734},
  tbstatus={pub},
  tbreference={36}
}

@article{NADL83,
  author={Walter Nadler and Klaus Schulten},
  title={Generalized Moment Expansion for the {M}\"ossbauer Spectrum of {B}rownian Particles},
  journal=PRL,
  volume=51,
  year=1983,
  pages={1712--1715},
  tbstatus={pub},
  tbreference={37}
}

@incollection{SCHU83,
author={Klaus Schulten},
title={Ensemble Averaged Spin Pair Dynamics of Doublet and Triplet Molecules},
booktitle={Organic Molecular Aggregates}, 
publisher={Springer},
editor={P. Reineker and H. Haken and H. C. Wolf}, 
year=1983, pages={76--87}, tbstatus={pub}, 
tbreference={38}
}

@article{BRUN83,
  author={Axel Br\"unger and Zan Schulten and Klaus Schulten},
  title={A Network Thermodynamic Investigation of Stationary and Non-Stationary Proton Transport through Proteins},
  journal=ZPC,
  volume={NF136},
  year=1983,
  pages={1--63},
  tbstatus={pub},
  tbreference={39}
}


%%%%%%%%%%%1984%%%%%%%%%%


@article{SCHU84,
  author={Klaus Schulten},
  title={Ensemble Averaged Spin Pair Dynamics of Doublet and Triplet Molecules},
  journal=JCP,
  volume=80,
  year=1984,
  pages={3668--3679},
  tbstatus={pub},
  tbreference={40}
}

@incollection{SCHU84A,
  author={Klaus Schulten and Axel Br\"unger and Walter Nadler and Zan Schulten},
  title={Generalized Moment Description of {B}rownian Dynamics in Biological Systems},
  booktitle={Synergetics --- From Microscopic to Macroscopic Order},
  publisher={Springer},
  editor={E. Frehland},
  year=1984,
  pages={80--89},
  tbstatus={pub},
  tbreference={41}
}

@incollection{SCHU84B,
  author={Klaus Schulten and Zan Schulten and Paul Tavan},
  title={An Isomerization Model for the Pump Cycle of Bacteriorhodo\-psin},
  booktitle={Information and Energy Transduction in Biological Membranes},
  publisher={Allan R.\ Liss, Inc.},
  address={New York},
  editor={L. Bolis and E. J. M. Helmreich and H. Passow},
  year=1984,
  pages={113--131},
  tbstatus={pub},
  tbreference={42}
}

@article{NADL84,
  author={Walter Nadler and Klaus Schulten},
  title={Theory of {M}\"ossbauer Spectra of Proteins Fluctuating between Conformational Substates},
  journal=PNAS,
  volume=81,
  year=1984,
  pages={5719--5723},
  tbstatus={pub},
  tbreference={43}
}

@article{TAVA84,
  author={Paul Tavan and Klaus Schulten},
  title={The Effect of Protonation on the Thermal Isomerization of Stilbazolium Betaines},
  journal=CPL,
  volume=110,
  year=1984,
  pages={191--195},
  tbstatus={pub},
  tbreference={44}
}

@article{SCHU84C,
  author={Klaus Schulten and Albert Weller},
  title={Magnetfeldeffekte in {C}hemie und {B}iologie},
  journal=DU,
  volume={25/26},
  year=1984,
  pages={779--783},
  tbstatus={pub},
  tbreference={45}
}


%%%%%%%%%%%1985%%%%%%%%%%


@article{TAVA85,
  author={Paul Tavan and Klaus Schulten and Dieter Oesterhelt},
  title={The Effect of Protonation and Electrical Interactions on the Stereochemistry of Retinal {Schiff} Bases},
  journal=BJ,
  volume=47,
  year=1985,
  pages={415--430},
  tbstatus={pub},
  tbreference={46}
} 

@article{SCHU85,
  author={Zan Schulten and Klaus Schulten},
  title={Model for the Resistance of the Proton Channel Formed by the Proteolipid of {ATP}ase},
  journal=EBJ,
  volume=11,
  year=1985,
  pages={149--155},
  tbstatus={pub},
  tbreference={47}
}

@article{TAVA85A,
  author={Paul Tavan and Klaus Schulten and Wolfgang G\"artner and Dieter Oesterhelt},
  title={Substituents at the {C}$_{13}$ Position of Retinal and their Influence on the Function of Bacteriorhodopsin},
  journal=BJ,
  volume=47,
  year=1985,
  pages={349--356},
  tbstatus={pub},
  tbreference={48}
}

@article{BRUN85,
  author={Axel Br\"unger and Reiner Peters and Klaus Schulten},
  title={Continuous Fluorescence Microphotolysis to Observe Lateral Diffusion in Membranes: Theoretical Methods and Applications},
  journal=JCP,
  volume=82,
  year=1985,
  pages={2147--2160},
  tbstatus={pub},
  tbreference={49}
}

@article{SCHU85B,
  author={Klaus Schulten},
  title={The Effect of Intramolecular Paramagnetic--Diamagnetic Ex\-change on the Magnetic Field Effect of Radical Pair Recombination}, 
  journal=JCP,
  volume=82,
  year=1985,
  pages={1312--1316},
  tbstatus={pub},
  tbreference={50}
}

@article{NADL85,
  author={Walter Nadler and Klaus Schulten},
  title={Generalized Moment Expansion for {B}rownian Relaxation Processes},
  journal=JCP,
  volume=82,
  year=1985,
  pages={151--160},
  tbstatus={pub},
  tbreference={51}
}

@article{NADL85A,
  author={Walter Nadler and Paul Tavan and Klaus Schulten},
  title={A Model for the Lateral Diffusion of `Stiff' Chains in a Lipid Bilayer},
  journal=EBJ,
  volume=12,
  year=1985,
  pages={25--31},
  keywords={lipid diffusion; random walk; multistate random walk; master equations; 2 dimensions},
  annote={very theoretical, more on thermodynamics than bilayers},
  tbstatus={pub},
  tbreference={52}
}

@article{TREU85,
  author={Herbert Treutlein and Klaus Schulten},
  title={Noise Induced Limit Cycles of the {B}onhoeffer--van~der~{P}ol Model of Neural Pulses},
  journal=BBG,
  volume=89,
  year=1985,
  pages={710--718},
  tbstatus={pub},
  tbreference={53}
}

@article{NADL85B,
  author={Walter Nadler and Klaus Schulten},
  title={Mean Relaxation Time Approximation for Dynamical Correlation Functions in Stochastic Systems near Instabilities},
  journal=ZPB,
  volume=59,
  year=1985,
  pages={53--61},
  tbstatus={pub},
  tbreference={54}
}

@article{SCHO85,
  author={M. Scholz and Klaus Schulten and Reiner Peters},
  title={Single-Cell Flux Measurement by Continuous Fluorescence Microphotolysis},
  journal=EBJ,
  volume=13,
  year=1985,
  pages={37--44},
  tbstatus={pub},
  tbreference={55}
}

@incollection{BITT85,
  author={Robert Bittl and Herbert Treutlein and Klaus Schulten},
  title={Electron Conduction along Aliphatic Chains},
  booktitle={Antennas and Reaction Centers of Photosynthetic Bacteria --- {S}tructure, Interaction and Dynamics},
  publisher={Springer},
  editor={M. Michel-Beyer\-le},
  year=1985,
  pages={264--276},
  tbstatus={pub},
  tbreference={56}
}

@article{BUHM85,
  author={Joachim Buhmann and Helge Ritter and Klaus Schulten},
  title={Neuro-Kyber\-netik und k\"unstliche {I}ntelligenz},
  journal=CW,
  volume=25,
  month=nov,
  year=1985,
  tbstatus={pub},
  tbreference={57}
}


%%%%%%%%%%%1986%%%%%%%%%%


@article{SCHU86,
  author={Zan Schulten and Klaus Schulten},
  title={Proton Conduction through Proteins: An Overview of Theoretical Principles and Applications},
  journal=ME,
  volume=127,
  year=1986,
  pages={419--438},
  tbstatus={pub},
  tbreference={58}
}

@article{TREU86,
  author={Herbert Treutlein and Klaus Schulten},
  title={Noise-Induced Neural Impulses},
  journal=EBJ,
  volume=13,
  year=1986,
  pages={355--365},
  tbstatus={pub},
  tbreference={59}
}

@article{NADL86,
  author={Walter Nadler and Klaus Schulten},
  title={Generalized Moment Expansion for Observables of Stochastic Processes in Dimensions $d>1$: Application to {M}\"ossbauer Spectra of Proteins},
  journal=JCP,
  volume=84,
  year=1986,
  pages={4015--4025},
  tbstatus={pub},
  tbreference={60}
}

@article{SCHU86A,
  author={Klaus Schulten and Robert Bittl},
  title={Probing the Dynamics of a Polymer with Paramagnetic End Groups by Magnetic Fields},
  journal=JCP,
  volume=84,
  year=1986,
  pages={5155--5161},
  tbstatus={pub},
  tbreference={61}
}

@article{RITT86,
  author={Helge Ritter and Klaus Schulten},
  title={On the Stationary State of {K}ohonen's Self-Organizing Sensory Mapping},
  journal=BC,
  volume=54,
  year=1986,
  pages={99--106},
  tbstatus={pub},
  tbreference={62}
}

@article{SCHU86B,
  author={Klaus Schulten},
  title={Continuous Fluorescence Microphotolysis by a $\sin^2 kx$ Grating},
  journal=CPL,
  volume=124,
  year=1986,
  pages={230--236},
  tbstatus={pub},
  tbreference={63}
}

@article{TAVA86,
  author={Paul Tavan and Klaus Schulten},
  title={Evidence for a 13,14-cis Cycle in Bacteriorhodopsin},
  journal=BJ,
  volume=50,
  year=1986,
  pages={81--89},
  tbstatus={pub},
  tbreference={64}
}

@article{BUHM86,
  author={Joachim Buhmann and Klaus Schulten},
  title={Associative Recognition and Storage in a Model Network of Physiological Neurons},
  journal=BC,
  volume=54,
  year=1986,
  pages={319--335},
  tbreference={65},
  tbstatus={pub}
}

@incollection{BUHM86A,
  author={Joachim Buhmann and Klaus Schulten},
  title={A Physiological Neural Network as an Autoassociative Memory},
  booktitle={Disordered Systems and Biological Organization},
  publisher={Springer},
  editor={E. Bienenstock and F. Fogelman and G. Weisbuch},
  year=1986,
  pages={273--279},
  tbreference={66},
  tbstatus={pub}
}

@article{HEGE86,
  author={Dieter Oesterhelt and P. Hegemann and Paul Tavan and Klaus Schulten},
  title={Trans-Cis Isomerization of Retinal and a Mechanism for Ion Trans\-location in Halorhodo\-psin},
  journal=EBJ,
  volume=14,
  year=1986,
  pages={123--129},
  tbreference={67},
  tbstatus={pub}
}

@incollection{BITT86,
  author={Robert Bittl and Klaus Schulten},
  title={Study of Polymer Dynamics by Magnetic Field Dependent Biradical Reactions},
  booktitle={Biophysical Effects of Steady Magnetic Fields},
  series={Proceedings in Physics}, 
  volume=11,
  publisher={Springer},
  address={Berlin},
  editor={G. Maret and N. Boccara and J. Kiepenheuer},
  year=1986,
  pages={90--98},
  tbreference={68},
  tbstatus={pub}
}

@incollection{SCHU86C,
  author={Klaus Schulten},
  title={Magnetic Field Effects on Radical Pair Processes in Chemistry and Biology},
  booktitle={Biological Effects of Static and Extremely Low Frequency Magnetic Fields},
  publisher={{MMV Medizin Verlag}},
  address={Munich},
  editor={J. H. Bernhard},
  year=1986,
  pages={133--140},
  tbreference={69},
  tbstatus={pub}
}

@incollection{SCHU86D,
  author={Klaus Schulten and Andreas Windemuth},
  title={Model for a Physiological Magnetic Compass},
  booktitle={Biophysical Effects of Steady Magnetic Fields},
  publisher={Springer},
  series={Proceedings in Physics}, 
  volume=11,
  address={Berlin},
  editor={G. Maret and N. Boccara and J. Kiepenheuer},
  year=1986,
  pages={99--106},
  tbreference={70},
  tbstatus={pub}
}

@inproceedings{BUHM86B,
  author={Joachim Buhmann and Klaus Schulten},
  title={Influence of Noise on the Behaviour of an Autoassociative Neural Network},
  booktitle={Neural Networks for Computing},
  publisher={American Institute of Physics Publication, Conference Proceedings
151},
  editor={J. S. Denker},
  year=1986,
  annote={This conference took place in Snowbird, Utah.},
  pages={71--76},
  tbreference={71},
  tbstatus={pub}
}

@inproceedings{RITT86A,
  author={Helge Ritter and Klaus Schulten},
  title={Topology Conserving Mappings for Learning Motor Tasks},
  booktitle={Neural Networks for Computing},
  publisher={American Institute of Physics Publication, Conference Proceedings
151},
  editor={J. S. Denker},
  year=1986,
  pages={376--380},
  annote={This conference took place in Snowbird, Utah.},
  tbreference={72},
  tbstatus={pub}
}

@inproceedings{DIVK86,
  author={Robert Divko and Klaus Schulten},
  title={Stochastic Spin Models for Pattern Recognition},
  booktitle={Neural Networks for Computing},
  publisher={American Institute of Physics Publication, Conference Proceedings
151},
  editor={J. S. Denker},
  year=1986,
  pages={129--134},
  annote={This conference took place in Snowbird, Utah.},
  tbreference={73},
  tbstatus={pub}
}

@article{TAVA86A,
  author={Paul Tavan and Klaus Schulten},
  title={The Low-Lying Electronic Excitations in Long Polyenes: {A} {PPP--MRD--CI} Study},
  journal=JCP,
  volume=85,
  number=11,
  annote={Dec 1},
  year=1986,
  pages={6602--6609},
  tbreference={74},
  tbstatus={pub}
}

@incollection{BUHM86D,
  author={Joachim Buhmann and Robert Divko and Helge Ritter and Klaus Schulten},
  title={Physicists Explore Human and Artificial Intelligence},
  booktitle={Structure and Dynamics of Nucleic Acids, Proteins and Membranes},
  publisher={Plenum Press},
  ediotr={E. Clementi and S. Chin},
  year=1986,
  pages={301--328},
  tbreference={76},
  tbstatus={pub}
}


%%%%%%%%%%%1987%%%%%%%%%%


@incollection{RITT87,
  author={Helge Ritter and Klaus Schulten},
  title={Planning a Dynamic Trajectory via Path Finding in Discretized Phase Space},
  booktitle={Parallel Processing: Logic, Organization, and Technology},
  series={Lecture Notes in Computer Science}, 
  volume=253,
  publisher={Springer},
  year=1987,
  pages={29--39}, 
  tbreference={75},
  tbstatus={pub}
}

@article{BUHM86C,
  author={Joachim Buhmann and Klaus Schulten},
  title={Influence of Noise on the function of a ``Physiological'' Neural Network},
  journal=BC,
  volume=56,
  year=1987,
  pages={313--327},
  tbreference={77},
  tbstatus={pub}
}

@article{BUHM87A,
  author={Joachim Buhmann and Klaus Schulten},
  title={Noise-Driven Temporal Association in Neural Networks},
  journal=EPL,
  volume=4,
  number=10,
  year=1987,
  pages={1205--1209},
  tbreference={78},
  tbstatus={pub}
}

@article{TAVA87,
  author={Paul Tavan and Klaus Schulten},
  title={Electronic Excitations in Finite and Infinite Polyenes},
  journal=PRB,
  volume=36, 
  number=8,
  year=1987,
  pages={4337--4358},
  tbreference={79},
  tbstatus={pub},
  annote={Sept 15}
}

@article{SHAR87,
  author={Kim Sharp and Richard Fine and Klaus Schulten and Barry Honig},
  title={{B}rownian Dynamics Simulation of Diffusion to Irregular Bodies},
  journal=PC,
  volume=91,
  year=1987,
  pages={3624--3631},
  annote={describes a computer program (and simulations done with it) which uses table look-up to speed up the computations at the expense of large memory requirements; variable (adaptive) time step and max. move criterion of 0.5\AA},
  keywords={Smoluchowski diffusion equation (Brownian dynamics); Monte Carlo algorithm; substrate--enzyme association; superoxide to superoxid dismutase (SOD)},
  tbreference={80},
  tbstatus={pub}
}

@incollection{SCHU87,
  author={Klaus Schulten},
  title={{Ordnung aus Chaos, Vernunft aus Zufall --- Physik biologischer und digitaler Infor\-mations\-verarbeitung}},
  booktitle={Ordnung aus dem Chaos},
  publisher={Piper Verlag}, address={Munich},
  editor={B.-O. K\"uppers},
  year=1987,
  pages={243--268},
  tbreference={81},
  tbstatus={pub}
}

@article{NADL87,
  author={Walter Nadler and Axel Br\"unger and Klaus Schulten and Martin Karplus},
  title={Molecular and Stochastic Dynamics of Proteins},
  journal=PNAS,
  volume=84,
  year=1987,
  pages={7933--7937},
  annote={uses stochastic boundary simulation},
  tbreference={82},
  tbstatus={pub}
}

@article{BUHM87,
  author={Joachim Buhmann and Robert Divko and Helge Ritter and Klaus Schulten},
  title={{Physik und Gehirn --- Wie dynamische Modelle von Nervennetzen nat\"urliche Intelligenz erkl\"aren}},
  journal=MCM,
  volume={9},
  year=1987,
  pages={108--120},
  tbreference={83},
  tbstatus={pub}
}


%%%%%%%%%%%1988%%%%%%%%%%


@article{ECCL88,
  author={Joseph Eccles and Barry Honig and Klaus Schulten},
  title={Spectroscopic Determinants in the Reaction Center of\begin{em} {R}hodo\-pseudo\-monas viridis\end{em}},
  journal=BJ,
  volume=53,
  year=1988,
  pages={137--144},
  tbreference={84},
  tbstatus={pub}
}

@incollection{RITT88,
  author={Helge Ritter and Klaus Schulten},
  title={Extending {K}ohonen's Self-Organizing Mapping Algorithm to Learn Ballistic Movements},
  booktitle={Neural Computers},
  publisher={Springer--Verlag}, 
  series=NATOF,
  volume=41,
  editor={R. Eckmiller and Ch. von der Malsburg},
  year=1988,
  pages={393--406},
  tbreference={85},
  tbstatus={pub}
}

@incollection{BUHM88,
  author={Joachim Buhmann and Klaus Schulten},
  title={Storing Sequences of Biased Patterns in Neural Networks with Stochastic Dynamics},
  booktitle={Neural Computers},
  publisher={Springer}, 
  series={Computer and Systems Sciences},
  editor={R. Eckmiller and Ch. von der Malsburg},
  year=1988,
  pages={231--242},
  tbreference={86},
  tbstatus={pub}
}

@article{TREU88A,
  author={Herbert Treutlein and Andreas Windemuth and Klaus Schulten},
  title={{``Molecular Design'' --- Simulation und Graphik von Biomolek\"ulen}},
  journal=MCM,
  volume={1},
  year=1988,
  pages={46--57},
  tbreference={87},
  tbstatus={pub}
}

@incollection{TAVA88,
  author={Paul Tavan and Klaus Schulten},
  title={Quasiparticle Excitations in Polyenes and Polyacetylene},
  booktitle={Nonlinear Optical Properties of Polymers},
  publisher={Materials Research Society},
  series={Symposium Proceedings},
  volume=109,
  address={Pittsburgh},
  editor={A. J. Heeger and J. Orenstein and D. Ulrich},
  year=1988,
  pages={163--170},
  tbreference={88},
  tbstatus={pub}
}

@article{BAUE88,
  author={Hans-Ulrich Bauer and Walter Nadler and Klaus Schulten},
  title={Generalized Moment Expansion of Dynamic Correlation Functions in Finite {I}sing Systems},
  journal=PRB,
  volume=38,
  year=1988,
  pages={445--458},
  tbreference={89},
  tbstatus={pub}
}

@incollection{TREU88B,
  author={Herbert Treutlein and Klaus Schulten and J. Deisenhofer and H. Michel and Axel Br\"unger and Martin Karplus},
  title={Molecular Dynamics Simulation of the Primary Processes in the Photosynthetic Reaction Center of\begin{em} {R}hodopseudomonas viridis\end{em}},
  booktitle={The Photosynthetic Bacterial Reaction Center: Structure and Dynamics},
  series=NATOA,
  volume= 149,
  publisher={Plenum},
  address={New York},
  editor={J. Breton and A. Verm\'eglio},
  year=1988,
  pages={139--150},
  tbreference={90},
  tbstatus={pub}
}

@incollection{TREU88C,
  author={Herbert Treutlein and Klaus Schulten and Christoph Niedermeier and J. Deisenhofer and H. Michel and D. Devault},
  title={Electrostatic Control of Electron Transfer in the Photosynthetic Reaction Center of\begin{em} {R}hodo\-pseudomonas viridis\end{em}},
  booktitle={The Photosynthetic Bacterial Reaction Center: Structure and Dynamics},
  series=NATOA,
  volume= 149,
  publisher={Plenum},
  address={New York},
  editor={J. Breton and A. Verm\'eglio},
  year=1988,
  pages={369--377},
  tbreference={91},
  tbstatus={pub}
}

@article{BITT88,
  author={Robert Bittl and Klaus Schulten},
  title={Length Dependence of the Magnetic Field Modulated Triplet Yield of Photogenerated Biradicals},
  journal=CPL,
  volume=146,
  year=1988,
  pages={58--62},
  tbreference={92},
  tbstatus={pub}
}

@article{BOEH88,
  author={Klaus Boehncke and Christoph K\"ohler and Georg Meyer-Berg and Klaus Schulten},
  title={Eine {C}omputersimulation k\"unstlicher {W}esen --- {E}xperimente in einer Welt synthetischer {P}sychologie},
  journal=MCM,
  volume={7},
  year=1988,
  pages={34--48},
  tbreference={93},
  tbstatus={pub}
}

@article{RITT88B,
  author={Helge Ritter and Klaus Schulten},
  title={Convergence Properties of {K}ohonen's Topology Conserving Maps: Fluctuations, Stability and Dimension Selection},
  journal=BC,
  volume=60,
  number=1,
  year=1988,
  pages={59--71},
  tbreference={95},
  tbstatus={pub}
}

@article{NADL88,
  author={Walter Nadler and Klaus Schulten},
  title={Mean Relaxation Time Approximation for Dynamical Correlation Functions in Stochastic Systems near Instabilities: {II}.\ {T}he Single Mode Laser},
  journal=ZP,
  volume=72,
  year=1988,
  pages={535--543},
  tbreference={96},
  tbstatus={pub}
}

@inproceedings{RITT88A,
  author={Helge Ritter and Klaus Schulten},
  title={{K}ohonen's Self-Organizing Maps: Exploring their Computational Capabilities},
  booktitle={IEEE International Conference on Neural Networks, San Diego, California, July 24--27, 1988},
  volume=1,
  publisher={The Institute of Electrical and Electronics Engineers},
  address={New York},
  year=1988,
  pages={109--116},
  tbreference={98},
  tbstatus={pub}
}

@inproceedings{BUHM88A,
  author={Joachim Buhmann and Klaus Schulten},
  title={Invariant Pattern Recognition by Means of Fast Synaptic Plasticity},
  booktitle={IEEE International Conference on Neural Networks, San Diego, California, July 24--27, 1988},
  volume=1,
  publisher={The Institute of Electrical and Electronics Engineers},
  address={New York},
  year=1988,
  pages={125--132},
  tbreference={99},
  tbstatus={pub}
}

@article{GRUB88,
  author={Helmut Grubm\"uller and Helmut Heller and Klaus Schulten},
  title={Eine {Cray} f\"ur 100.000~{DM}},
  journal=MCM,
  volume={11},
  year=1988,
  pages={48--64},
  tbreference={100}
}

@incollection{TREU88D,
  author={Herbert Treutlein and Christoph Niedermeier and Klaus Schulten and J. Deisenhofer and H. Michel and Axel Br\"unger and Martin Karplus},
  title={Molecular Dynamics Simulation of the Primary Processes in the \mbox{Photosynthetic} Reaction Center of\begin{em} {R}hodopseudomonas viridis\end{em}},
  booktitle={Transport Through Membranes: Carriers, Channels and Pumps},
  editor={A. Pullman and others},
  pages={513-525},
  publisher={Kluwer Academic Publishers},
  address={Dordrecht},
  year=1988,
  tbreference={101},
  tbstatus={pub}
}


%%%%%%%%%%%1989%%%%%%%%%%


@article{BITT89,
  author={Robert Bittl and Klaus Schulten},
  title={A Static Ensemble Approximation for Stochastically Modulated Quantum
Systems},
  journal=JCP,
  volume=90,
  year=1989,
  pages={1794--1803},
  tbreference={94},
  tbstatus={pub}
}

@article{BUHM89,
  author={Joachim Buhmann and Robert Divko and Klaus Schulten},
  title={Associative Memory with High Information Content},
  journal=PRA,
  volume=39,
  year=1989,
  pages={2689--2692},
  tbreference={97},
  tbstatus={pub}
}

@article{GROS89,
  author={Michael F. Grossjean and Paul Tavan and Klaus Schulten},
  title={Can Normal Mode Analysis Reveal the Geometry of the {L}$_{550}$ Chromophore of Bacteriorhodopsin?},
  journal=EBJ,
  volume=16,
  pages={341-349},
  year=1989,
  tbreference={102},
  tbstatus={pub}
}

@article{RITT89,
  author={Helge Ritter and Thomas Martinetz and Klaus Schulten},
  title={Wie neuronale {N}etwerke {R}oboter steuern k\"{o}nnen},
  journal=MCM,
  volume=2,
  pages={48-61},
  year=1989,
  tbreference={103},
  tbstatus={pub}
}

@article{RITT89A,
  author={Helge Ritter and Thomas Martinetz and Klaus Schulten},
  title={Topology-Conserving Maps for Learning Visuo-motor-Coordination},
  journal=NNET, 
  volume=2,
  pages={159-168},
  year=1989,
  tbreference={104},
  tbstatus={pub}
}

@article{RUBN89,
  author={Jeanne Rubner and Klaus Schulten},
  journal=BC,
  title={A Regularized Approach to Color Constancy},
  volume=61,
  year=1989,
  pages={29-36},
  tbreference={105},
  tbstatus={pub}
}

@incollection{RITT89B,
  author={Helge Ritter and Thomas Martinetz and Klaus Schulten},
  title={Topology-Conserving Maps for Motor Control},
  booktitle={Neural Networks: From Models to Applications, {N'EURO~'88}},
  pages={579--591},
  editor={L. Personnaz and G. Dreyfus},
  publisher={{EZIDET}},
  address={Paris},
  year=1989,
  tbreference={106},
  tbstatus={pub}
}

@incollection{BUHM89A,
  author={Joachim Buhmann and Robert Divko and Klaus Schulten},
  title={On Sparsely Coded Associative Memories},
  booktitle={Neural Networks: From Models to Applications, {N'EURO~'88}},
  pages={360-371},
  editor={L. Personnaz and G. Dreyfus},
  publisher={{EZIDET}},
  address={Paris},
  year=1989,
  tbreference={107},
  tbstatus={pub}
}

@inproceedings{MART89A,
  author={Thomas Martinetz and Helge Ritter and Klaus Schulten},
  title={{3D}-Neural-Net for Learning Visuomotor-Coordination of a Robot Arm},
  booktitle={Proceedings of the International Joint Conference on Neural Networks, Washington},
  organization={The Institute of Electrical and Electronics Engineers},
  address = {San Diego},
  year=1989,
  pages={351-356},
  volume=2,
  tbreference={108},
  tbstatus={pub}
}

@incollection{MART89,
  author={Thomas Martinetz and Helge Ritter and Klaus Schulten},
  title={Kohonen's Self-Organizing Map for Modeling the Formation of the Auditory Cortex of a Bat},
  booktitle={Connectionism in Perspective},
  publisher={North-Holland},
  address={Amsterdam},
  editor={R. Pfeifer and Z. Schreter and F. Fogelman-Souli\'e and L. Steels},
  year=1989,
  pages={403--412},
  tbreference={109}
}

@article{ALMS89,
  author={Markus van Almsick and Klaus Schulten},
  title={Mathematica: Mathematik auf {M}ikrocomputern},
  journal=MCM,
  volume={11},
  year=1989,
  pages={42--59},
  tbreference={112}
}


%%%%%%%%%%%1990%%%%%%%%%%


@book{RITT90C,
  author={Helge Ritter and Thomas Martinetz and Klaus Schulten},
  title={Textbook: Neuronale Netze: Eine Einf\"uhrung in die Neuroinformatik selbstorganisierender Abbildungen},  
  publisher={Ad\-di\-son-Wesley},
  edition={First},
  address={Bonn},
  year=1990,
  tbreference={110}
}

@article{HELL90,
  author={Helmut Heller and Helmut Grubm\"uller and Klaus Schulten},
  title={Molecular Dynamics Simulation on a Parallel Computer},
  journal=MS,
  volume=5,
  year=1990,
  pages={133--165},
  tbreference={111}
}

@article{BITT90,
  author={Robert Bittl and Klaus Schulten},
  title={Biradical Spin Dynamics with Distance-Dependent Exchange Interaction and Electron Transfer Efficiency},
  journal=CPL,
  volume=173,
  year=1990,
  pages={387--392},
  tbreference={113}
}

@article{MART90,
  author={Thomas Martinetz and Helge Ritter and Klaus Schulten},
  title={Three-Dimensional Neural Net for Learning Visuo-Motor Coordination of a Robot Arm},
  journal=IEEENN,
  volume=1,
  year=1990,
  pages={131--136},
  tbreference={114}
}

@article{RUBN90,
  author={Jeanne Rubner and Klaus Schulten},
  title={Development of Feature Detectors by Self-Organization: A Network Model},
  journal=BC,
  volume=62,
  year=1990,
  pages={193-199},
  tbreference={115}
}

@incollection{OBER90,
  author={Klaus Obermayer and Helge Ritter and Klaus Schulten},
  title={Large-Scale Simulation of a Self-Organizing Neural Network: Formation of a Somatotopic Map},
  pages={71--74},
  booktitle={Parallel Processing in Neural Systems and Computers},
  editor={R. Eckmiller and G. Hartmann and G. Hauske},
  publisher={Elsevier},
  address={Amsterdam},
  year=1990,
  annote={This book is contains the proceedings of the Int. Conf. on Parallel Processing in Neural Systems and Computers {(ICNC)}, D\"usseldorf, March 1990},
  tbreference={116},
  tbstatus={pub}
}

@incollection{MART90A,
  author={Thomas Martinetz and Helge Ritter and Klaus Schulten},
  title={Learning of Visuo Motor-Coordination of a Robot Arm with Redundant Degrees of Freedom},
  pages={431--434},
  booktitle={Parallel Processing in Neural Systems and Computers},
  editor={R. Eckmiller and G. Hartmann and G. Hauske},
  publisher={Elsevier},
  address={Amsterdam},
  year=1990,
  annote={This book is contains the proceedings of the Int. Conf. on Parallel Processing in Neural Systems and Computers {(ICNC)}, D\"usseldorf, March 1990},
  tbstatus={pub},
  tbreference={117}
}

@incollection{DIVK90,
  author={Robert Divko and Klaus Schulten},
  title={Hierarchical Spin Model for Stereo Interpretation Using Phase Sensitive Detectors},
  pages={335--338},
  booktitle={Parallel Processing in Neural Systems and Computers},
  editor={R. Eckmiller and G. Hartmann and G. Hauske},
  publisher={Elsevier},
  address={Amsterdam},
  year=1990,
  annote={This book is contains the proceedings of the Int. Conf. on Parallel Processing in Neural Systems and Computers {(ICNC)}, D\"usseldorf, March 1990},
  tbstatus={pub},
  tbreference={118}
}

@incollection{RUBN90A,
  author={Jeanne Rubner and Klaus Schulten and Paul Tavan},
  title={A Self-Organizing Network for Complete Feature Extraction},
  pages={365--368},
  booktitle={Parallel Processing in Neural Systems and Computers},
  editor={R. Eckmiller and G. Hartmann and G. Hauske},
  publisher={Elsevier},
  address={Amsterdam},
  year=1990,
  annote={This book is contains the proceedings of the Int. Conf. on Parallel Processing in Neural Systems and Computers {(ICNC)}, D\"usseldorf, March 1990},
  tbstatus={pub},
  tbreference={119}
}

@article{BITT90A,
  author={Robert Bittl and Klaus Schulten and Nick Turro},
  title={Micellar Radical Pair Decay},
  journal=JCP,
  volume=93,
  year=1990,
  pages={8260--8269},
  tbreference={121}
}

@book{RITT90,
  author={Helge Ritter and Thomas Martinetz and Klaus Schulten},
  title={{Textbook: Neuronale Netze: Eine Einf\"uhrung in die Neuroinformatik selbstorganisierender Abbildungen}},  
  publisher={Ad\-di\-son-Wesley},
  edition={Second Enlarged},
  address={Bonn},
  year=1990,
  tbreference={122}
}

@article{GROS90,
  author={Michael F. Grossjean and Paul Tavan and Klaus Schulten},
  title={Quantum Chemical Vibrational Analysis of the Chromophore of Bacteriorhodopsin},
  journal=JPC,
  volume=94,
  year=1990,
  pages={8059--8069},
  tbreference={124}
}

%% the number field is unusual, but correct:
@article{TESC90,
  author={Markus Tesch and Klaus Schulten},
  title={A Simulated Cooling Process for Proteins},
  journal=CPL,
  volume=169,
  number={{1,2}},
  month=may,
  year=1990,
  pages={97--102},
  tbreference={128},
  annote={May 25, 1990}
}

@incollection{WALT90,
  author={J\"org A. Walter and Helge Ritter and Klaus Schulten},
  title={Non-Linear Prediction with Self-Organizing Maps},
  booktitle={International Joint Conference on Neural Networks, San Diego, California},
  publisher={The Institute of Electrical and Electronics Engineers},
  address = {New York},
  volume={1},
  year=1990,
  pages={589--594},
  tbreference={130}
}

@incollection{OBER90C,
  author={Klaus Obermayer and Helge Ritter and Klaus Schulten},
  title={A Neural Network Model for the Formation of Topographic Maps in the {CNS}: Development of Receptive Fields},
  booktitle={International Joint Conference on Neural Networks, San Diego, California},
  publisher={The Institute of Electrical and Electronics Engineers},
  address = {New York},
  volume={2},
  year=1990,
  pages={423--429},
  tbreference={131}
}

@incollection{MART90B,
  author={Thomas Martinetz and Klaus Schulten},
  title={Hierarchical Neural Net for Learning Control of a Robot's Arm and Gripper},
  booktitle={International Joint Conference on Neural Networks, San Diego, California},
  publisher={The Institute of Electrical and Electronics Engineers},
  address = {New York},
  volume=2,
  year=1990,
  pages={747--752},
  tbreference={132}
}

@article{OBER90D,
  author={Klaus Obermayer and Helge Ritter and Klaus Schulten},
  title={Large-Scale Simulations of Self-Organizing Neural Networks on Parallel Computers: Application to Biological Modelling},
  journal=PA,
  volume=14,
  year=1990,
  pages={381--404},
  tbreference={133},
  tbstatus={pub}
}

@article{OBER90A,
  author={Klaus Obermayer and Helge Ritter and Klaus Schulten},
  title={A Principle for the Formation of the Spatial Structure of Cortical Feature Maps},
  journal=PNAS,
  volume=87,
  year=1990,
  pages={8345--8349},
  tbreference={138}
}

@inproceedings{BOEH90,
  author={Klaus Boehncke and Helmut Heller and Helmut Grubm\"uller and Klaus Schulten},
  title={Molecular Dynamics Simulations on a Systolic Ring of Transputers},
  booktitle={{NATUG~3:} Transputer Research and Applications~3},
  organization={North American Transputer Users Group},
  editor={Alan S. Wagner},
  publisher={{IOS} Press},
  pages={83--94},
  year={1990},
  address={Amsterdam},
  tbreference={139},
  annotes={Proceedings of the Third Conference of the North American Transputer Users Group, April~26--27, 1990 --- Sunnyvale, CA}
}

@inproceedings{OBER90B,
  author={Klaus Obermayer and Helmut Heller and Helge Ritter and Klaus Schulten},
  title={Simulation of Self-Organizing Neural Nets: A Comparision Between a Transputer Ring and a {C}onnection {M}achine {CM-2}},
  booktitle={{NATUG~3}: Transputer Research and Applications~3},
  organization={North American Transputer Users Group},
  publisher={{IOS} Press},
  address={Amsterdam},
  editor={Alan S. Wagner},
  year=1990,
  pages={95--106},
  annotes={Proceedings of the Third Conference of the North American Transputer Users Group, April~26--27, 1990 --- Sunnyvale, CA},
  tbreference={140},
  tbstatus={pub}
}


%%%%%%%%%%%1991%%%%%%%%%%


@incollection{KURR91C,
  author={Christian Kurrer and Klaus Schulten},
  title={Propagation of Chemical Waves in Discrete Excitable Media:  Anisotropic and Isotropic Wave Fronts},
  booktitle={Nonlinear Wave Processes in Excitable Media},
  series=NASB, 
  volume=244,
  editor={A. V. Holden and M. Markus and H. G. Othmer},
  publisher={Plenum Press},
  address={New York},
  year=1991,
  pages={489-500},
  tbreference={120},
  tbstatus={pub}
}

@article{WIND91A,
   author={Andreas Windemuth and Klaus Schulten},
   title={Molecular Dynamics Simulation on the {C}onnection {M}achine},
   journal=MS,
   volume=5,
   year=1991,
   pages={353-361},
   tbreference={127}
}

@article{NONE91,
  author={Marco Nonella and Klaus Schulten},
title={Molecular Dynamics Simulation of Electron Transfer in Proteins:  {T}heory and Application to {Q$_A$ $\rightarrow$ Q$_B$} Transfer in the Photosynthetic Reaction Center},
  journal=JPC,
  volume=95,
  year=1991,
  pages={2059--2067},
  tbreference={134}
}

@techreport{WIND91B,
  author={Andreas Windemuth and Klaus Schulten},
  title={Stochastic Dynamics Simulation for Macromolecules},
  type={Beckman Institute Technical Report},
  number={TB-91-19},
  institution={University of Illinois},
  tbtechrep={TB-91-19},
  tbreference={135},
  annote={This was only published as a technical report, never as a journal article.},
  year=1991
}

@incollection{RITT91,
  author={Helge Ritter and Klaus Obermayer and Klaus Schulten and Jeanne Rubner},
  title={Self-Organizing Maps and Adaptive Filters},
  booktitle={Models of Neural Networks},
  series={Physics of Neural Networks},
  publisher={Springer--Verlag},
  address={New York},
  editor={J. Leo van Hemmen and Eytan Domany and Klaus Schulten},
  year=1991,
  pages={281--306},
  tbreference={136},
  annote={Probably this book is volume 1 in the series, but this fact is not mentioned on the title page.}
}

@article{KURR91,
  author={Christian Kurrer and Klaus Schulten},
  title={Effect of Noise and Perturbations on Limit Cycle Systems},
  journal=PD,
  volume=50,
  year=1991,
  pages={311--320},
  tbreference={137}
}

@article{GRUB91,
  author={Helmut Grubm\"uller and Helmut Heller and Andreas Windemuth and Klaus Schulten},
  title={Generalized {V}erlet Algorithm for Efficient Molecular Dynamics Simulations with Long-Range Interactions},
  journal=MS,
  year=1991,
  volume=6,
  pages={121--142},
  tbreference={141},
  tbstatus={pub}
}

@article{BOEH91,
  author={Klaus Boehncke and Marco Nonella and Klaus Schulten and Andrew {H.-J.} Wang},
  title={Molecular Dynamics Investigation of the Interaction Between {DNA} and Dystamycin},
  journal=BCH,
  volume=30,
  year=1991,
  pages={5465--5475},
  tbreference={143}
}

@incollection{KURR91B,
   author={Christian Kurrer and Benno Nieswand and Klaus Schulten},
   title={A Model for Synchronous Activity in the Visual Cortex},
   booktitle={Self-Organization, Emergent Properties, and Learning},
   editor={A. Babloyantz},
   year={1991},
   series=NASB,
   volume={260},
   pages = {81--95},   
   publisher={Plenum Press},
   address={New York},
   tbreference={144}
}

@article{SCHU91A,
  author={Klaus Schulten and Markus Tesch},
  title={Coupling of Protein Motion to Electron Transfer: Molecular Dynamics and Stochastic Quantum Mechanics Study of Photosynthetic Reaction Centers},
  journal=CP,
  pages	= {421--446},
  volume = 158,
  tbtechrep={TB-91-15},
  year	= 1991,
  tbreference={146}
}
  
@incollection{MART91B,
  author={Thomas Martinetz and Klaus Schulten},
  title={A ``Neural Gas'' Network Learns Topologies},
  booktitle={Artificial Neural Networks},
  publisher={Elsevier},
  address={Amsterdam},
  editor={Teuvo Kohonen and Kai M\"akisara and Olli Simula and Jari Kangas},
  year=1991,
  pages={397--402},
  tbreference={150},
  tbtechrep={TB-91-05}
}

@incollection{OBER91B,
  author={Klaus Obermayer and Gary G. Blasdel and Klaus Schulten},
  title={A Neural Network Model for the Formation and for the Spatial Structure of Retinotopic Maps, Orientation- and Ocular Dominance Columns},
  booktitle={Artificial Neural Networks},
  publisher={Elsevier},
  address={Amsterdam},
  editor={Teuvo Kohonen and Kai M\"akisara and Olli Simula and Jari Kangas},
  year=1991,
  pages={505--511},
  tbreference={151},
  tbtechrep={TB-91-09}
}

@incollection{ERWI91,
  author = {Edgar Erwin and Klaus Obermayer and Klaus Schulten},
  title = {Convergence Properties of Self-Organizing Maps},
  booktitle={Artificial Neural Networks},
  publisher={Elsevier},
  address={Amsterdam},
  editor={Teuvo Kohonen and Kai M\"akisara and Olli Simula and Jari Kangas},
  year=1991,
  pages={409-414},
  tbreference={152},
  tbtechrep={TB-91-05}
}

@incollection{WALT91,
  author={J\"org A. Walter and Thomas Martinetz and Klaus Schulten},
  title={Industrial Robot Learns Visuo-Motor Coordination by Means of ``Neural Gas'' Network},
  booktitle={Artificial Neural Networks},
  publisher={Elsevier},
  address={Amsterdam},
  editor={Teuvo Kohonen and Kai M\"akisara and Olli Simula and Jari Kangas},
  year=1991,
  pages={357--364},
  tbreference={153},
  tbtechrep={TB-91-07}
}

@incollection{KURR91A,
  author = {Christian Kurrer and Benno Nieswand and Klaus Schulten},
  title	= {Dynamics of Synchronous Neural Activity in the Visual Cortex},
  booktitle={Artificial Neural Networks},
  publisher={Elsevier},
  address={Amsterdam},
  editor={Teuvo Kohonen and Kai M\"akisara and Olli Simula and Jari Kangas},
  tbtechrep={TB-91-08},
  pages	= {133--138},
  tbreference={154},
  year	= {1991}
}
  
@incollection{OBER91A,
  author={Klaus Obermayer and Helge Ritter and Klaus Schulten},
  title={Development and Spatial Structure of Cortical Feature Maps: A Model Study},
  booktitle={Advances in Neural Information Processing Systems~3},
  publisher={Morgan Kaufmann},
  address={San Mateo CA},
  editor={D. Touretzky and R. Lippman},
  year=1991,
  pages={11--17},
  tbreference={155}
}

@article{NONE91A,
  author={Marco Nonella and Andreas Windemuth and Klaus Schulten},
  title={Structure of Bacteriorhodopsin and {\em in situ} Isomerization of Retinal: A Molecular Dynamics Study},
  journal=JPP,
  volume = 54,
  number=6,
  pages = {937--948},
  year = 1991,
  tbreference={156},
  tbtechrep={TB-91-03}
}

@incollection{BERK91,
  author={Stanislav G. Berkovitch and Philippe Dalger and Ted Hesselroth and Thomas Martinetz and Beno\^{\i}t No\"el and J\"org A. Walter and Klaus Schulten},
  title={Vector Quantization Algorithm for Time Series Prediction and Visuo-Motor Control of Robots},
  booktitle={{Verteilte K\"{u}nstliche Intelligenz und kooperatives Arbeiten}},
  series={Informatikfachberichte},
  volume=291,
  editor={W. Brauer and D. Hernandez},
  pages={443-447},
  publisher={Springer},
  address={Berlin},
  year=1991,
  tbstatus={pub},
  tbreference={160}
}

@article{PUET91,
  author = {Benno P{\"u}tz and Daniel Barsky and Klaus Schulten},
  title = {Edge Enhancement by Diffusion: Microscopic Magnetic Resonance Imaging of an Ultra-Thin Glass Capillary},
  journal =CPL,
  year = 1991,
  volume = 183, number=5,
  pages = {391--396},
  tbreference={161},
  tbtechrep= {TB-91-02}
}


%%%%%%%%%%%1992%%%%%%%%%%


@article{BARS92A,
  author={Daniel Barsky and Benno P\"utz and Klaus Schulten and Richard L. Magin},
  title={Theory of Paramagnetic Contrast Agents in Liposome Systems},
  journal=MRM,
  volume = 24,
  pages	= {1--13},
  year	= {1992},
  tbreference={129}
}

@article{NIED92,
  author={Christoph Niedermeier and Klaus Schulten},
  title={Molecular Dynamics Simulations in Heterogenous Dielectrica and {D}ebye-{H}\"uckel Media: {A}pplication to the Protein Bovine Pancreatic Trypsin Inhibitor},
  journal=MS,
  volume= 8,
  number= 6,
  pages	= {361-387},
  year	= {1992},
  keywords={BPTI},
  tbreference={142}
}

@article{OBER91,
  author={Klaus Obermayer and Helge Ritter and Klaus Schulten},
  title={A Model for the Development of the Spatial Structure of Retinotopic Maps and Orientation Columns},
  journal=IEICECCS,
  volume={{E75-A}}, number=5, month=may,
  year=1992,
  pages={537-545},
  note={Reprinted in {\em The Principles of Organization in Organisms --- {S}anta {F}e {I}nstitute Studies in the Sciences of Complexity, Vol.~{XII}.}  A.\ Baskin and J.\ Mittenthal, Eds. (Addison Wesley, 1991)},
  tbreference={145},
  tbstatus={pub},
  annote={In the book version, the pages are 141-166.}
}

@article{TREU91,
  author={Herbert Treutlein and Klaus Schulten and Axel Br\"unger and Martin Karplus and J. Deisenhofer and H. Michel},
  title={Chromophore-Protein Interactions and the Function of the Photosynthetic Reaction Center: A Molecular Dynamics Study},
  journal=PNAS,
  volume = 89,
  pages	= {75--79},
  year=1992,
  tbtechrep={TB-91-10},
  tbreference={123}
}

@article{BAUE91,
  author={Wolfgang R. Bauer and Klaus Schulten},
  title={Theory of Contrast Agents in Magnetic Resonance Imaging: Coupling of Spin Relaxation and Transport.},
  journal=MRM,
  volume= 26,
  pages	= {16--39},
  tbreference={125},
  year	= 1992}

@article{GROS91,
  author={M. K. Grossjean and Michael F. Grossjean and Klaus Schulten and Paul Tavan},
  title={Semistochastic Approach to Many Electron Systems},
  journal=JCP,
  volume=97, number=3,
  month=aug,
  year=1992,
  pages = {1865--1875},
  tbstatus = {pub}, 
  tbreference={126}
}

@article{PUET92,
  author = {Benno P{\"u}tz and Daniel Barsky and Klaus Schulten},
  title	= {Edge Enhancement by Diffusion in Microscopic Magnetic Resonance Imaging},
  journal=JMR,
  volume = 97,
  pages = {27--53},
  year = 1992,
  tbreference={147},
  tbstatus={pub},
  tbtechrep={TB-91-01}
}

@article{SHIF92,
  author={Mark A. Shifman and Andreas Windemuth and Klaus Schulten and Perry L. Miller},
  title={Molecular Dynamics Simulation on a Network of Workstations Using a Machine-Indepen\-dent Parallel Programming Language},
  journal=CBR,
  volume=25,
  year=1992,
  pages={168--180},
  tbreference={157}
}

@incollection{ERWI92,
  author={Edgar Erwin and Klaus Obermayer and Klaus Schulten},
  title={Formation of Dimension-Reducing Somatotopic Maps},
  booktitle={Proceedings of the Fourth Conference on Neural Networks and Parallel Distributed Processing},
  editor={Samir I. Sayegh},
  publisher={Indiana University at Fort Wayne},
  year=1992,
  pages={115--126},
  annote={The title of the lecture at the conference was ``Formation and Variability of Somatotopic Maps with Topological Mismatch'', but that is NOT the title of this article.},
  tbreference={158}
}

@book{RITT92,
  author={Helge Ritter and Thomas Martinetz and Klaus Schulten},
  title={Textbook: Neural Computation and Self-Organizing Maps: An Introduction},
  publisher={Ad\-di\-son-Wesley},
  address={New York},
  edition={Revised {E}nglish},
  year=1992,
  tbreference={159}
}

@article{BAUE92,
  author={Wolfgang R. Bauer and Klaus Schulten},
  title={Nuclear Spin Dynamics {(I=1/2)} Under the Influence of Random Perturbation Fields in the ``Strong Collision'' Approximation},
  journal=BBG,
  volume= 96,
  pages	= {721--727},  
  tbreference={162},
  year	= 1992
}

@article{ERWI92A,
  author={Edgar Erwin and Klaus Obermayer and Klaus Schulten},
  title={Self-Organizing Maps: Ordering, Convergence Properties and Energy Functions},
  journal=BC,
  year=1992,
  volume=67, number=1,
  pages={47-55},
  tbreference={163},
  tbtechrep={TB-91-11},
  annote={Technical report TB-91-11 combines two papers into one.}
}

@article{ERWI92B,
  author={Edgar Erwin and Klaus Obermayer and Klaus Schulten},
  title={Self-Organizing Maps: Stationary States, Metastability and Convergence Rate},
  journal=BC,
  year=1992,
  volume=67, number=1,
  pages={35-45},
  tbreference={164},
  tbtechrep={TB-91-11},
  annote={Technical report TB-91-11 combines two papers into one.}
}

@inproceedings{SCHU92,
  author={Klaus Schulten},
  title={Computational Biology on Massively Parallel Machines},
  booktitle={Parallel Computation~--- {P}roceedings of the First International {ACPC} Conference, Salzburg, Austria},
  publisher={Springer},
  address={New York},
  year=1992,
  pages={391--400},
  tbreference={165}
}

@incollection{XU92,
  author={Dong Xu and Klaus Schulten},
  title={Multi-Mode Coupling of Protein Motion to Electron Transfer in the Photosynthetic Reaction Center: Spin-Boson Theory Based on a Classical Molecular Dynamics Simulation},
  booktitle={The Photosynthetic Bacterial Reaction Center: II.\ Struc\-ture,  
Spectroscopy and Dynamics},
  series=NATOA,
  editor={J. Breton and A. Vermeglio},
  publisher={Plenum Press},
  address={New York},
  pages={301--312},
  year=1992,
  tbreference={176},
  tbstatus={pub},
  tbtechrep={TB-92-14}
}

@article{OBER92C,
author={Klaus Obermayer and Gary G. Blasdel and Klaus Schulten},
title={Statistical-Mechanical Analysis of Self-Organization and Pattern Formation During the Development of Visual Maps},
journal=PRA,
volume=45, number=10, month=may,
pages = {7568--7589},
year=1992,
annote={May 15, 1992.  Early version had a different title: ``Statistical-Mechanical ... formation in the primary visual cortex of the macaque.''},
tbreference={167},
tbtechrep={TB-92-03},
tbstatus={pub}
}

@incollection{OBER92D, 
  author={Klaus Obermayer and Klaus Schulten and Gary G. Blasdel},
  title={A Comparison Between a Neural Network Model for the Formation of Brain Maps and Experimental Data},
  booktitle={Advances in Neural Information Processing Systems~4},
  editor={D. S. Touretzky and R. Lippman},
  publisher={Morgan Kaufmann Publishers}, 
  pages={83-90},
  year=1992,
  tbreference={170},
  tbstatus={pub},
  tbtechrep={TB-91-01}
}

%% Check to see that it prints properly.
@article{HELL92B,
  author={Helmut Heller and Klaus Schulten},
  title={Parallel Distributed Computing for Molecular Dynamics: Simulation of Large Heterogeneous Systems on a Systolic Ring of Transputers},
  journal=CDA,
  volume=7,
  year=1992,
  pages={11--22},
  number=8,
  month=AUG,
  tbreference={171},
  tbtechrep={TB-92-09},
  tbstatus={pub},
  annote={Also published in Proceedings of the Fifth Conference on Neural Networks and Distributed Parallel Processing, Indiana University--Purdue University at Fort Wayne, Samir I.\ Sayegh, Ed. pp. 55-76 (1992).}
}

@article{BARS92B,
  author = {Daniel Barsky and Benno P\"utz and Klaus Schulten and J. Schoeniger and E. W. Hsu and S. Blackband},
  title	= {Diffusional Edge Enhancement Observed by {NMR} in Thin Glass Capillaries},
  journal = CPL,
  volume = 200,
  pages	= {88--96},
  year	= 1992,
  tbreference={172},
  tbtechrep={TB-92-10}
}

@article{BOAR92,
  author={Board, Jr., John A. and J. W. Causey and Leathrum, Jr., James F. and Andreas Windemuth and Klaus Schulten},
  title={Accelerated Molecular Dynamics Simulation with the Parallel Fast Multipole Algorithm},
  journal=CPL, 
  volume=198,
  pages={89-94},
  year=1992,
  tbtechrep={TB-92-11},
  tbstatus={pub},
  tbreference={173}
}


%%%%%%%%%%%1993%%%%%%%%%%


@article{MART93A,
  author={Thomas Martinetz and Klaus Schulten},
  title={A Neural Network for Robot Control: Cooperation Between Neural Units as a Requirement for Learning},
  journal=CEE, 
  annote={Special Issue on ``Neural Networks: Theory and Applications in Robotics and Manufacturing''},
  volume=19,
  number=4,
  pages={315--332},
  year=1993,
  tbreference={148},
  tbstatus={press}
}

@article{MART93B,
  author={Thomas M. Martinetz and Stanislav G. Berkovich and Klaus Schulten},
  title={``{N}eural Gas'' for Vector Quantization and its Application to Time-Series Prediction},
  journal=IEEENN,
  volume=4,
  number=4,
  year = 1993,
  pages={558--569},
  tbtechrep={TB-91-22},
  tbreference={149},
  tbstatus={pub},
  annote={Formerly called MART91A, Published in the July 1993 issue.}
}

@article{WALT93,
  author={J\"org A. Walter and Klaus Schulten},
  title={Implementation of Self-Organizing Neural Networks for Visuo-Motor Control of an Industrial Robot},
  journal=IEEENN,
  volume=4, number=1, pages={86-95},
  year=1993,
  tbreference={168},
  tbstatus={pub},
  tbtechrep={TB-91-21},
  annote={Jan 1, 1993}
}

@article{ZHOU93,
  author={Feng Zhou and Andreas Windemuth and Klaus Schulten},
  title={Molecular Dynamics Study of the Proton Pump Cycle of Bacteriorhodopsin},
  journal=BCH,
  volume=32, number=9,
  annote={month=mar},
  pages={2291--2306},
  tbreference={169},
  tbtechrep={TB-92-02},
  tbstatus={pub},
  year=1993
}

@article{KURR93,
  author={Christian Kurrer and Klaus Schulten},
  title={Dependence of Percolation Thresholds on Lattice Connectivity},
  journal=PRE,
  volume=48,
  number=1,
  month=jul,
  year=1993,
  pages={614--617},
  tbreference={177},
  tbstatus={pub},
  tbtechrep={TB-93-02},
  annote={Early title was ``Dependence of Percolation Thresholds on the Lattice Coordination Number''}
}

@article{HELL93,
  author={Helmut Heller and Michael Schaefer and Klaus Schulten},
  title={Molecular Dynamics Simulation of a Bilayer of 200 Lipids in the Gel and in the Liquid Crystal-Phases},
  journal=JPC,
  year=1993,
  volume=97,
  pages={8343--8360},
  tbreference={179},
  note={},
  tbstatus={pub},
  tbtechrep={TB-92-18 and TB-93-03},
  annote={Previous title: ``Construction, Molecular Dynamics Simulation and Analysis of a Lipid Bilayer''; Coordinates available through Brookhaven protein data bank, ID Code 1TOY}
}

@incollection{ERWI93,
 author={Edgar Erwin and Klaus Obermayer and Klaus Schulten}, 
 title={A Comparison of Models of Visual Cortical Map Formation}, 
 booktitle={Computation and Neural Systems},
 editor={Frank H. Eeckman and James M. Bower},
 publisher={Kluwer Academic Publishers},
 chapter={60},
 pages={395-402},
 year=1993, 
 tbreference={180},
 tbtechrep={TB-92-16},
 tbstatus={pub}
}

@inproceedings{SMAG93,
  author={Patrick van der Smagt and Klaus Schulten},
  title={Control of Pneumatic Robot Arm Dynamics by a Neural Network},
  booktitle={Proceedings of the World Congress on Neural Networks, Portland, OR,  July 11-15},
  year=1993,
  volume=3,
  pages={180--183},
  tbreference={181},
  tbstatus={pub}
}

@inproceedings{MART93C,
  author={Thomas Martinetz and Klaus Schulten},
  title={A Neural Network with {H}ebbian-Like Adaptation Rules Learning Visuomotor Coordination of a {PUMA} Robot},
  booktitle={Proceedings of the {IEEE} International Conference on Neural Networks ({ICNN--93}), {S}an {F}rancisco},
  pages={820--825},
  year=1993,
  tbstatus={pub},
  tbreference={182},
  annote={Published in April 93.  The early draft of this paper was called ``Neural Network with {H}ebbian-Like Adaptation Rules Learning Control of a {PUMA} Robot'', and included J\"org A. Walter as an author, and was submitted to NIPS, but was not published.}
}


%%%%%%%%%%%1994%%%%%%%%%%


@article{XU94,
  author={Dong Xu and Klaus Schulten},
  title={Coupling of Protein Motion to Electron Transfer in a Photosynthetic Reaction Center: Investigating the Low Temperature Behaviour in the Framework of the Spin-Boson Model}, 
  journal=CP,
  volume=182,
  pages={91--117},
  year=1994,
  tbreference={166},
  tbstatus={pub},
  tbtechrep={TB-91-16},
  annote={May 1, 1994 issue.  Note the volume is 182(2,3)}
}

@article{SINH94,
  author={Amitabh B. Sinha and Klaus Schulten and Helmut Heller },
  title={Performance Analysis of a Parallel Molecular Dynamics Program},
  journal=CPC,
  year=1994,
  tbreference={174},
  tbstatus={published},
  tbtechrep={TB-92-13},
  volume=78,
  pages={265--278}
}

@article{HESS94,
  author={Ted Hesselroth and Kakali Sarkar and P. Patrick van der Smagt and Klaus Schulten},
  title={Neural Network Control of a Pneumatic Robot Arm},
  journal=IEEESMC,
  volume=24,
  number=1,
  pages={28--37},
  year=1994,
  tbreference={175},
  tbstatus={press},
  tbtechrep={TB-92-15}
}

@article{MART94,
  author={Thomas Martinetz and Klaus Schulten},
  title={Topology Representing Networks},
  journal=NNET,
  volume=7,
  number=3,
  pages={507--522},
  year=1994,
  tbreference={178},
  tbstatus={pub},
  tbtechrep={TB-93-04},
  annote={The original technical report is TB-93-04.  The first techreport title was ``Competitive {H}ebbian Rule Forms {D}elauny Triangulations, Perfect Topology Preserving Maps, and Discrete Models of Manifolds''.  The title when the paper was originally submitted was ``Competitive {H}ebbian Rule Forms Manifold Representing Networks''.  A new techreport might be made from the revised version.(?)}
}

@article{PUET94,
	author={Benno P{\"u}tz and Daniel Barsky and Klaus Schulten},
	title={Mechanisms of Liposomal Contrast Agents in Magnetic Resonance Imaging.},
  journal=JLSR,
	annote={Invited for publication. Submitted approx. Oct 25, 1993 to Journal of Liposome Research.},
  volume=4,
  number=2,
  pages={771--808},
  year=1994,
  tbreference={184},
  tbtechrep={TB-93-08}
}

@article{HUMP94A,
  author={William Humphrey and Ilya Logunov and Klaus Schulten and Mordechai Sheves},
  title={Molecular Dynamics Study of Bacteriorhodopsin and Artificial Pigments},
  journal={Biochemistry},
  volume=33,
  pages={3668--3678},
  year=1994,
  tbreference={185},
  tbtechrep={TB-93-09}
}

@incollection{BISH94,
  author={Thomas C. Bishop and Klaus Schulten},
  title={Molecular Dynamics Study of a Sequence Specific Protein--{DNA} Interaction},
  booktitle={Computational Approaches in Supramolecular Chemistry},
  editor={G. Wipff},
  year=1994,
  pages={419--439},
  publisher={Kluwer Academic Publishers},
  address={Boston},
  annote={Submitted, Oct. 28 1993. The series will be NATO ASI series, need to find out which series and which volume.  This is the proceedings of a conference of the same name.},
  tbreference={186},
  tbtechrep={TB-93-10} 
}

@article{CANF94,
  author={Jeff M. Canfield and R. Linn Belford and Peter G. Debrunner and Klaus Schulten},
  title={A Perturbation Theory Treatment of Oscillating Magnetic Fields in the Radical Pair Mechanism},
  journal=CP,
  volume=182,
  year=1994,
  pages={1--18},
  tbtechrep={TB-93-13},
  tbstatus={pub},
  tbreference={187},
  annote={April 15 issue}
}

@article{BOAR94,
  author={Board, Jr., John A. and Laxmikant V. Kal{\'e} and Klaus Schulten and Robert D. Skeel
and Tamar Schlick},
  title={Modeling Biomolecules: Larger Scales, Longer Durations},
  journal=IEEECSE, 
  volume={{W}inter},
  pages={19--30},
  year=1994,
  tbtechrep={},
  tbstatus={},
  tbreference={196}
}


%%%%%%%%%%%1995%%%%%%%%%%


@article{CANF95,
  author={Jeff M. Canfield and R. Linn Belford and Peter G. Debrunner and Klaus Schulten},
  title={A Perturbation Theory Treatment of Oscillating Magnetic Fields in the Radical Pair Mechanism},
  journal=CP,
  year=1995,
  pages={347-347},
  volume=191,
  techrep={},
  tbreference={205}
}

@article{LOGU95C,
  author={Ilya Logunov and William Humphrey and Klaus Schulten and Mordechai Sheves},
  title={Molecular Dynamics Study of the 13-{\it cis} Form ({bR}$_{548}$) of Bacteriorhodopsin and Its Photocycle},
  journal=BJ,
  year=1995,
  volume=68,
  pages={1270-1282},
  tbreference={192},
  tbtechrep={TB-94-20}
}

@incollection{ERWI95,
  author={Edgar Erwin and Klaus Obermayer and Klaus Schulten},
  title={A Critical Comparison of Models for Orientation and Ocular Dominance Columns in the Striate Cortex},
  booktitle={Advances in Neural Information Processing Systems 7},
  editor={G. Tesauro and D. Touretzky and T. Leen},
  publisher={MIT Press},
  address={Cambridge, Mass and London, England},
  year=1995,
  pages={93-100},
  note={},
  tbreference={189}
}

@article{ERWI95A,
  author={Edgar Erwin and Klaus Obermayer and Klaus Schulten},
  title={Models of Orientation and Ocular Dominance Columns in the Visual Cortex: A Critical Comparison},
  journal=NC,
  year=1995,
  volume=7,
  pages={425-468},
  tbreference={191},
  tbtechrep={TB-94-08},
  annote={Technical report TB-94-08. Sumitted to "Neural Computation".}
}

@article{ZHOU95,
  author={Feng Zhou and Klaus Schulten},
  title={Molecular Dynamics Study of a Membrane--Water Interface},
  journal=JPC,
  year=1995,
  pages={2194--2208},
  volume=99,
  techrep={TB-94-11},
  tbreference={193},
  annote={}
}

@article{KURR95,
  author={Christian Kurrer and Klaus Schulten},
  journal=PRE,
  year=1995,
  volume=51,
  number=6,
  pages={6213-6218},
  title={Noise-Induced Neuronal Oscillations},
  annote={[Beckman Institute Technical Report TB-93-16]},
  tbtechrep={TB-93-16},
  tbreference={194}
}

@article{SHEN95,
  author={Qing Sheng and Klaus Schulten and Charles Pidgeon},
  title={A Molecular Dynamics Simulation of Immobilized Artificial Membranes},
  journal=JPC,
  year=1995,
  volume=99,
  number=27,
  pages={11018-11027},
  annote={[Beckman Institute Technical Report TB-95-04]},
  tbreference={198}
}

@article{CANF95A,
  author={J. M. Canfield and R. L. Belford and P. G. Debrunner and K. Schulten}, 
  title={A Perturbation Treatment of Oscillating Magnetic Fields in the Radical Pair Mechanism Using the {Liouville} Equation},
  journal=CP,
  year=1995,
  volume=195,
  pages={59-69},
  note={},
  techrep={},
  tbreference={215}
}

@inproceedings{TZON95,
  author={Svilen Tzonev and Joseph Malpeli and Klaus Schulten},
  title={Morphogenesis of the Lateral Geniculate Nucleus: How Singularities Affect Global Structure},
  booktitle={Advances in Neural Information Processing Systems 7},
  editor={G. Tesauro and D. Touretzky  and T. Leen},
  publisher={MIT Press},
  address={Cambridge, Mass and London, England},
  year=1995,
  pages={133-140},
  note={},
  techrep={TB-94-13},
  tbreference={190},
}

@incollection{MULL95,
  author={K.-R. M\"uller and M. Finke and N. Murata and K. Schulten and S. Amari},
  title={Large Scale Simulations for Learning Curves},
  booktitle={Progress in neural Processing Vol. {\bf 1} / Neural Networks: The Statistical Mechanics Perspective},
  editor={Jong-Hoon Oh and Chulan Kwon and Sungzoon Cho},
  publisher={World Scientific},
  address={Singapore},
  year=1995,
  pages={73-84},
  note={},
  annote={},
  tbreference={204}
}

@article{XU95A,
  author={Dong Xu and Klaus Schulten and Oren M. Becker and Martin Karplus},
  title={Temperature Quench Echoes in Proteins},
  journal=JCP,
  year=1995,
  volume=103,
  pages={3112-3123},
  annote={[Beckman Institute Technical Report TB-95-02]},
  tbreference={199}
}

@article{XU95B,
  author={Dong Xu and Klaus Schulten},
  title={Velocity Reassignment Echoes in Proteins},
  journal=JCP,
  year=1995,
  volume=103,
  pages={3124-3139},
  annote={[Beckman Institute Technical Report TB-95-01]},
  tbreference={200}
}

@inproceedings{NELS95,
  author={Mark Nelson and William Humphrey and Attila Gursoy and Andrew Dalke
  and Laxmikant Kal{\'e} and Robert Skeel and Klaus Schulten and Richard Kufrin},
  booktitle={Computational Mechanics 95},
  editor={S.N. Atluri and G. Yagawa and T.A. Cruse},
  title={{MDScope} -- {A} Visual Computing Environment for Structural Biology},
  volume=1,
  pages={476-481},
  year=1995,
  note={},
  annote={},
  tbreference={207},
  tbtechrep={}
}

@article{HU95,
  author={Xiche Hu and Dong Xu and Kenneth Hamer and Klaus Schulten and J\"urgen Koepke and Hartmut Michel},
  title={Predicting the Structure of the Light-Harvesting Complex {II} of {{\em Rhodospirillum molischianum}}},
  journal=PS,
  year=1995,
  volume=4,
  pages={1670-1682},
  note={},
  tbstatus={published},
  tbreference={208}
}

@article{NELS95A,
  author={Mark Nelson and William Humphrey and Attila Gursoy and Andrew Dalke
  and Laxmikant Kal{\'e} and Robert Skeel and Klaus Schulten and Richard Kufrin},
  title={{MDScope} -- {A} Visual Computing Environment for Structural Biology},
  journal=CPC,
  year=1995,
  volume=91,
  number={1, 2 and 3},
  pages={111-134},
  annote={[Beckman Institute Technical Report TB-94-18]},
  tbreference={195},
  tbstatus={published},
  tbtechrep={TB-94-18}
}

@article{PHIL95A,
  author={James Phillips and Klaus Schulten},
  title={Diffusive hysteresis at high and low driving frequencies},
  journal=PRE,
  year=1995,
  volume=52,
  number=3,
  pages={2473-2477},
  note={},
  tbreference={206},
  tbstatus={published}
}

@article{HUMP95,
  author={William Humphrey and Dong Xu and Mordechai Sheves and Klaus Schulten},
  title={Molecular Dynamics Study of the Early Intermediates in the Bacteriorhodopsin Photocycle},
  journal=JPC,
  year=1995,
  volume=99,
  pages={14549-14560},
  note={},
  tbreference={211},
  tbstatus={published},
  annote={submitted on Feb. 8th, 95; [Beckman Institute Technical Report TB-95-05]}
}

@incollection{BISH95A,
  author={Thomas C. Bishop and Helmut Heller and Klaus Schulten},
  title={Molecular Dynamics on Parallel Computers: Applications for Theoretical Biophysics},
  booktitle={Toward Teraflop Computing and New Grand Challenge Applications},
  editor={Rajiv K. Kalia and Priya Vashishta},
  year=1995,
  pages={129-138},
  publisher={Nova Science Publishers, Inc., New York},
  note={},
  annote={},
  tbreference={188},
  tbstatus={published},
  tbtechrep={} 
}

@article{XU95C,
  author={Dong Xu and Mordechai Sheves and Klaus Schulten},
  title={Molecular Dynamics Study of the {M412} Intermediate of Bacteriorhodopsin},
  journal=BJ,
  year=1995,
  volume=69,
  number=6,
  pages={2745-2760},
  tbstatus={published},
  tbreference={216}
}

@inproceedings{ZELL95,
  author={Michael Zeller and K. R. Wallace and Klaus Schulten},
  title={Biological Visuo-Motor Control of a Pneumatic Robot Arm},
  booktitle={Intelligent Engineering Systems Through Artificial Neural Networks},
  publisher={American Society of Mechanical Engineers},
  editor={Dagli and others},
  address={New York},
  year=1995,
  volume=5,
  pages={645-650},
  note={},
  annote={These are conference proceedings of ANNIE95; original "editor" field read: {Dagli and Akay and Chen and Fernandez and Ghosh}},
  techrep={},
  tbstatus={accepted},
  tbreference={212}
}


@article{SCHU95B,
  author={Klaus Schulten and William Humphrey and Ilya Logunov and Mordechai Sheves and Dong Xu},
  title={Molecular Dynamics Studies of Bacteriorhodopsin's Photocycles},
  journal=IJC,
  year=1995,
  volume=35,
  pages={447-464},
  tbreference={210},
  tbstatus={published},
  annote={Invited publication.}
}

@inproceedings{LOGU95,
  author={Ilya Logunov and Klaus Schulten},
  title={Quantum Chemistry of {\it in situ} Retinal:  Study of the Spectral Properties and Dark Adaptation of Bacteriorhodopsin},
  booktitle={Proceedings of the Ecole de Physique des Houches},
  editor={D. Bicout and M. J. Field},
  publisher={Les Editions de Physique, Springer},
  address={Paris},
  year=1995,
  pages={235-256},
  note={},
  annote={},
  techrep={},
  tbstatus={published},
  tbreference={213}
}

@inproceedings{SCHU95,
  author={Klaus Schulten},
  title={Curve Crossing in a Protein:  Coupling of the Elementary Quantum Process to Motions of the Protein},
  booktitle={Proceedings of the Ecole de Physique des Houches},
  editor={D. Bicout and M. J. Field},
  publisher={Les Editions de Physique, Springer},
  address={Paris},
  year=1995,
  pages={85-118},
  note={},
  annote={},
  techrep={},
  tbstatus={published.},
  tbreference={214}
}

@article{MULL95A,
  author={K.-R. M\"uller and N. Murata and M. Finke and K. Schulten and S. Amari},
  title= {A Numerical Study of Learning Curves in Stochastic Multi-Layer Feed-Forward Networks},
  journal=NC,
  volume = 8,
  pages={1085-1106},
  year=1995,
  annote={[University of Tokyo Technical Report METR 95-03]},
  tbstatus={Published},
  tbreference={219}
}


%%%%%%%%%%%1996%%%%%%%%%%


@incollection{SARK96,
  author={Kakali Sarkar and Klaus Schulten},
  title={Topology Representing Network in Robotics},
  booktitle={Models of Neural Networks},
  series={Physics of Neural Networks},
  volume=3,
  pages={281-302},
  year=1996,
  publisher={Springer--Verlag},
  address={New York},
  editor={J. Leo van Hemmen and Eytan Domany and Klaus Schulten},
  tbreference={183},
  note={},
  tbtechrep={TB-93-15},
  tbstatus={published},
  annote={}
}

@incollection{HU96,
  author={Xiche Hu and Dong Xu and Kenneth Hamer and Klaus Schulten and J\"urgen Koepke and Hartmut Michel},
  title={Knowledge-Based Structure Prediction of the Light-Harvesting Complex {II} of {{\em Rhodospirillum molischianum}}},
  booktitle={Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding},
  publisher={American Mathematical Society},
  address={Providence, R.I.},
  editor={P. M. Pardalos and D. Shalloway and G. Xue},
  pages={97-122},
  year=1996,
  note={},
  tbreference={202},
  tbstatus={published}
}

@article{XU96,
  author={Dong Xu and Charles Martin and Klaus Schulten},
  title={Molecular Dynamics Study of Early Picosecond Events in the Bacteriorhodopsin Photocycle: Dielectric Response, Vibrational Cooling and the {J, K} Intermediates},
  journal=BJ,
  year=1996,
  volume=70,
  number=1,
  pages={453-460},
  tbstatus={published.},
  tbreference={218}
}

@article{BISH96,
  author={Thomas C. Bishop and Klaus Schulten},
  title={Molecular Dynamics Study of Glucocorticoid Receptor--{DNA} Binding},
  journal=PRO,
  volume=24,
  number=1,
  pages={115-133},
  year=1996,
  tbreference={209},
  note={},
  tbstatus={published},
  tbtechrep={TB-95-07}
}

@article{BALS96,
  author={Manel A. Balsera and Willy Wriggers and Yoshitsugu Oono and Klaus Schulten},
  title={Principal Component Analysis and Long Time Protein Dynamics},
  journal=JPC,
  volume=100,
  number=7,
  pages={2567--2572},
  year=1996,
  note={},
  tbtechrep={},
  tbreference={220},
  tbstatus={published.},
  annote={there is no BI techreport on this one yet}
}

@article{ZHOU96,
  author={Feng Zhou and Klaus Schulten},
  title={Molecular Dynamics Study of the Activation of Phospholipase {$A_2$} on a Membrane Surface},
  journal=PRO,
  year=1996,
  volume=25,
  number=1,
  pages={12-27},
  note={},
  techrep={},
  tbstatus={Published.},
  tbreference={223}
}

@article{HUMP96,
  author={William F. Humphrey and Andrew Dalke and Klaus Schulten},
  title={{VMD} -- {V}isual {M}olecular {D}ynamics},
  journal=JMG,
  year=1996,
  volume=14,
  pages={33-38},
  note={},
  tbstatus={Published.},
  techrep={},
  tbreference={222}
}

@article{KOEP96,
  author={J\"urgen Koepke and Xiche Hu and Cornelia M\"unke and Klaus Schulten and Hartmut Michel},
  title={The Crystal Structure of the Light Harvesting Complex {II} {(B800-850)} from {{\em Rhodospirillum molischianum}}.},
  journal="Structure",
  volume=4,
  pages={581-597},
  year=1996,
  note={},
  tbreference={225},
  tbstatus={Published.},
  techrep={TB-96-02},
  annote={}
}

@article{KOSZ96,
  author={Ioan Kosztin and Byron Faber and Klaus Schulten},
  title={Introduction to the Diffusion {M}onte {C}arlo Method},
  journal=AJP,
  volume=64,
  pages={633-644},
  year=1996,
  note={},
  tbreference={201},
  annote={submitted on 2/14/95},
  tbstatus={Published}
}

@inproceedings{SCHU96B,
  author={Klaus Schulten and Michael Zeller},
  title={Topology Representing Maps and Brain Function},
  booktitle={Nova Acta Leopoldina NF},
  editor={},
  publisher={Jahresversammlungsband},
  address={},
  year=1996,
  volume={72},
  pages={133-157},
  note={},
  annote={number=294},
  tbstatus={Published},
  tbreference={217}
}

@incollection{HU96A,
  author={Xiche Hu and Dong Xu and Kenneth Hamer and Klaus Schulten and J\"urgen Koepke and Hartmut Michel},
  title={Prediction of the Structure of an Integral Membrane Protein--the Light-Harvesting Complex {II} of {{\em Rhodospirillum molischianum}}},
  booktitle={Biological Membranes: A Molecular Perspective from Computation and Experiment},
  pages ={503-533},
  year=1996,
  publisher={Birkh\"auser},
  address={Cambridge, MA},
  editor={K.M. Merz and B. Roux},
  tbstatus={Published},
  tbreference={203}
}

@article{XU96A,
  author={Dong Xu and James Christopher Phillips and Klaus Schulten},
  title={Protein Response to External Electric Fields: Relaxation, Hysteresis and Echo},
  journal=JPC,
  volume=100,
  pages={12108--12121},
  year=1996,
  note={},
  techrep={TB-95-09},
  tbstatus={Published.},
  tbreference={224}
}

@inproceedings{ZELL96,
  author={Michael Zeller and Rajeev Sharma and Klaus Schulten},
  booktitle={Proceedings of the 1996 World Congress on Neural Networks},
  editor={},
  title={Topology Representing Network for Sensor-Based Robot Motion Planning},
  publisher={{INNS} Press},
  volume={},
  pages={100-103},
  year={1996},
  note={},
  tbreference={229},
  tbstatus={Published.}
}

@inproceedings{ZELL96A,
  author={Michael Zeller and Rajeev Sharma and Klaus Schulten},
  title={Vision-Based Motion Planning of a Pneumatic Robot Using a Topology Representing Neural Network},
  booktitle={Proceedings of 1996 IEEE Int. Symposium on Intelligent Control},
  editor={},
  pages={7-12},
  year={1996},
  note={},
  tbreference={230},
  tbstatus={Published.}
}

@inproceedings{SHAR96,
  author={R. Sharma and T. S. Huang and V. I. Pavlovic and K. Schulten and A. Dalke and J. Phillips and M. Zeller and W. Humphrey and Y. Zhao and Z. Lo and S. Chu},
  title={Speech/gesture Interface to a Visual Computing Environment for Molecular Biologists},
  booktitle={Proceedings of 13th ICPR 96},
  editor={},
  publisher={},
  address={},
  year=1996,
  volume=3,
  pages={964-968},
  note={},
  annote={},
  tbreference={227},
  tbstatus={Published}
}

@article{NELS96,
  author={Mark Nelson and William Humphrey and Attila Gursoy and Andrew Dalke and Laxmikant Kal{\'e} and Robert D. Skeel and Klaus Schulten},
  title={{NAMD} -- {A} Parallel, Object-Oriented Molecular Dynamics Program},
  journal=JSCA,
  year=1996,
  volume=10,
  pages={251-268},
  note={},
  techrep={},
  tbstatus={Published.},
  tbreference={226}
}

@article{SMAG96,
  author={P. van der Smagt and F. Gr\"on and K. Schulten},
  title={Analysis and control of a rubbertuator arm},
  journal=BC,
  year=1996,
  volume=75,
  pages={433-440},
  note={},
  tbstatus={Published.},
  techrep={},
  tbreference={231}
}

@article{LOGU96,
  author={Ilya Logunov and Klaus Schulten},
  title={Quantum Chemistry -- Molecular Dynamics  Study of the Dark Adaptation Process in Bacteriorhodopsin},
  journal=JACS,
  year=1996,
  volume=118,
  pages={9727--9735},
  note={},
  tbstatus={Published.},
  techrep={TB-95-23},
  tbreference={228}
}


%%%%%%%%%%%1997%%%%%%%%%%


@incollection{SCHU97,
  author={Klaus Schulten and Hui Lu and Linsen Bai},
  title={Probing Protein Motion Through Temperature Echoes},
  booktitle={Physics of Biological Systems: From Molecules to Species},
  editor={Henrik Flyvbjerg and John Hertz and Mogens H. Jensen and Ole G. Mouritsen and Kim Sneppen},
  series={Lecture Notes in Physics},
  publisher={Springer},
  pages ={117-152},
  year=1997,
  note={},
  tbreference={221},
  tbstatus={Published.}
}

@article{HUMP97,
  author={William Humphrey and Ernst Bamberg and Klaus Schulten},
  title={Photoproducts of Bacteriorhodopsin Mutants: A Molecular Dynamics Study},
  journal=BJ,
  volume=72,
  pages={1347--1356},
  year={1997},
  note={},
  tbreference={234},
  tbstatus={Published},
  annote={}
}

@article{BARS97,
  author  = {Daniel Barsky and Benno P\"utz and Klaus Schulten},
  title = {Theory of Heterogeneous Relaxation in Compartmentalized Tissues},
  journal = MRM,
  volume = 37,
  pages = {666-675},
  year = 1997,
  note = {},
  tbtechrep={},
  tbreference={233},
  tbstatus={Published.}
}

@article{KOSZ97,
  author={Ioan Kosztin and Klaus Schulten },
  title={Boundary Integral Method for Stationary States of Two-Dimensional Quantum Systems},
  journal="Int. J. of Modern Phys. C",
  pages={293-325},
  volume=8,
  year=1997,
  note={},
  tbreference={239},
  tbstatus={Published.}
}

@article{IZRA97,
  author={Sergei Izrailev and Sergey Stepaniants and Manel Balsera and Yoshi Oono and Klaus Schulten},
  title={Molecular Dynamics Study of Unbinding of the Avidin-Biotin Complex},
  journal=BJ,
  volume=72,
  pages={1568-1581},
  year=1997,
  note={},
  tbreference={236},
  tbstatus={Published.},
  annote={}
}

@article{BISH97,
  author={Tom Connor Bishop and Dorina Kosztin and Klaus Schulten },
  title={How Hormone Receptor--{DNA} Binding Affects Nucleosomal {DNA}:  The Role of Symmetry},
  journal=BJ,
  volume=72,
  pages={2056--2067},
  year=1997,
  note={},
  tbreference={237},
  tbstatus={Published.},
  annote={}
}

@article{HU97,
  author={Xiche Hu and Thorsten Ritz and Ana Damjanovi\'c and Klaus Schulten },
  title={Pigment Organization and Transfer of Electronic Excitation in the Purple Bacteria},
  journal=JPCB,
  volume=101,
  pages={3854--3871},
  year=1997,
  note={},
  tbreference={240},
  tbstatus={Published.},
  annote={}
}

@article{ZELL97C,
  author={Michael Zeller and Rajeev Sharma and Klaus Schulten},
  title={Motion Planning of a Pneumatic Robot Using a Neural Network},
  journal={IEEE Control Systems Magazine},
  volume=17,
  pages={89-98},
  year={1997},
  note={},
  tbreference={235},
  tbstatus={Published.},
  annote={}
}

@inproceedings{ZELL97A,
  author={Michael Zeller and Rajeev Sharma and Klaus Schulten},
  title={Learning the Perceptual Control Manifold for Sensor-Based Robot Path Planning},
  booktitle={Proceedings of the 1997 {IEEE} International Symposium on Computational Intelligence in Robotics and Automation {(CIRA'97)}},
  publisher={{IEEE} Computer Society Press},
  year=1997,
  volume={},
  pages={48-53},
  note={},
  annote={},
  tbstatus={Published.},
  tbreference={246}
}

@inproceedings{ZELL97B,
  author={Michael Zeller and James C. Phillips and Andrew Dalke and William Humphrey and Klaus Schulten and Rajeev Sharma and T. S. Huang and V. I. Pavlovic and Y. Zhao and Z. Lo and S. Chu},
  title={A Visual Computing Environment for Very Large Scale Biomolecular Modeling},
  booktitle={Proceedings of the 1997 {IEEE} International Conference on Application-specific Systems, Architectures and Processors {(ASAP)}},
  publisher={{IEEE} Computer Society Press},
  year=1997,
  volume={},
  pages={3-12},
  note={},
  annote={An invited paper.},
  tbstatus={Published.},
  tbreference={247}
}

@article{WRIG97A,
  author={Willy Wriggers and Klaus Schulten },
  title={Stability and Dynamics of {G}-actin: {B}ack Door Water Diffusion and Behavior of a subdomain {3/4} loop},
  journal=BJ,
  volume={73},
  pages={624-639},
  year={1997},
  note={},
  tbreference={245},
  tbstatus={Published.},
  annote={}
}

@article{KOSZ97A,
  author={Dorina Kosztin and Thomas C. Bishop and Klaus Schulten},
  title={Binding of the Estrogen Receptor to {DNA}: {T}he Role of Waters},
  journal=BJ,
  volume={73},
  pages={557-570},
  year={1997},
  note={},
  tbreference={243},
  tbstatus={Published.},
  annote={}
}

@article{HU97B,
  author={Xiche Hu and Klaus Schulten },
  title={How Nature Harvests Sunlight},
  journal="Physics Today",
  volume={50},
  pages={28-34},
  year=1997,
  note={},
  annote={},
  tbstatus={Published.},
  tbreference={248}
}

@inproceedings{DALK97,
  author={Andrew Dalke and Klaus Schulten},
  title={Using {TCL} for Molecular Visualization and Analysis},
  booktitle={Proceedings of the {P}acific {S}ymposium on {B}iocomputing '97},
  pages={85-96},
  volume={2},
  year={1997},
  note={},
  tbreference={232},
  tbstatus={Published.},
  annote={}
}

@article{BALS97,
  author={Manel Balsera and Sergey Stepaniants and Sergei Izrailev and Yoshitsugu Oono and Klaus Schulten},
  title={Reconstructing Potential Energy Functions from Simulated Force-Induced Unbinding Processes},
  journal=BJ,
  volume=73,
  pages={1281-1287},
  year={1997},
  note={},
  tbreference={244},
  tbstatus={Published.},
  annote={}
}

@article{WRIG97,
  author={Willy Wriggers and Klaus Schulten },
  title={Protein Domain Movements: {D}etection of Rigid Domains and Visualization of Hinges in Comparisons of Atomic Coordinates},
  journal=PRO,
  volume=29,
  number=1,
  pages={1-14},
  year={1997},
  note={},
  tbreference={241},
  tbstatus={Published.},
  annote={}
}

@article{BISH97A,
  author={Thomas C. Bishop and Robert D. Skeel and Klaus Schulten},
  title={Difficulties with Multiple Time Stepping and the Fast Multipole Algorithm in Molecular Dynamics},
  journal=JCC,
  pages={1785-1791},
  volume=18,
  year=1997,
  note={},
  tbreference={242},
  tbstatus={Published.},
  annote={}
}

@article{PHIL97,
  author={James C. Phillips and Willy Wriggers and Zhigang Li and Ana Jonas and Klaus Schulten},
  title={Predicting the structure of apolipoprotein {A-I} in reconstituted high density lipoprotein disks},
  journal=BJ,
  volume=73,
  pages={2337-2346},
  year=1997,
  note={},
  tbreference={249},
  tbstatus={Published.},
  annote={}
}

@incollection{ZELL97,
  author={Michael Zeller and Rajeev Sharma and Klaus Schulten},
  title={Vision-Based Robot Motion Planning Using a Topology Representing Neural Network},
  booktitle={Applications of Neural Adaptive Control Technology},
  editor={Jens Kalkkuhl and Ken Hunt and Rafal Zbikowski and Andrzej Dzielinski},
  volume={17},
  pages={181-204},
  year={1997},
  series={World Scientific Series in Robotics and Intelligent Systems},
  publisher={World Scientific Publishing},
  note={},
  tbreference={238},
  tbstatus={Published.}
}

@article{ISRA97,
  author={Barry Isralewitz and Sergei Izrailev and Klaus Schulten},
  title={Binding Pathway of Retinal to Bacterio-opsin: {A} Prediction by Molecular Dynamics Simulations},
  journal=BJ,
  volume={73},
  pages={2972-2979},
  year={1997},
  note={},
  tbreference={250},
  tbstatus={Published.},
  annote={}
}

@article{STEP97A,
  author={Sergey Stepaniants and Sergei Izrailev and Klaus Schulten},
  title={Extraction of Lipids from Phospholipid Membranes by Steered Molecular Dynamics},
  journal=JMM,
  volume=3,
  pages={473-475},
  year={1997},
  note={},
  tbreference={251},
  tbstatus={Pblished.},
  annote={}
}


%%%%%%%%%%%1998%%%%%%%%%%


@article{BALA98,
  author={Alexander Balaeff and Mair E. A. Churchill and Klaus Schulten },
  title={Structure prediction of a complex between the chromosomal protein {HMG-D} and {DNA}},
  journal=PRO,
  pages={113-135},
  volume=30,
  number=1,
  year=1998,
  note={},
  tbreference={253},
  tbstatus={Published.},
  annote={}
}

@article{HOFA98,
  author={Ivo Hofacker and Klaus Schulten },
  title={Oxygen and Proton Pathways in Cytochrome c Oxidase},
  journal=PRO,
  pages={100--107},
  year=1998,
  number=1,
  volume=30,
  note={},
  tbreference={252},
  tbstatus={Published.},
  annote={}
}

@article{RITZ98,
  author={Thorsten Ritz and Xiche Hu and Ana Damjanovi\'c and Klaus Schulten},
  title={Excitons and Excitation Transfer in the Photosynthetic Unit of Purple Bacteria},
  journal={Journal of Luminescence},
  volume={76-77},
  pages={310--321},
  year={1998},
  note={},
  tbreference={254},
  tbstatus={Published.},
  annote={The article appears in the DPC `97 Proceedings being published in the journal}
}

@article{WRIG98B,
  author={Willy Wriggers and Ernest Mehler and Felicia Pitici and Harel Weinstein and Klaus Schulten},
  title={Structure and Dynamics of Calmodulin in Solution},
  journal=BJ,
  volume={74},
  pages={1622--1639},
  year={1998},
  note={},
  tbreference={261},
  tbstatus={Published.},
  annote={}
}

@article{HU98,
  author={Xiche Hu and Ana Damjanovi\'c and Thorsten Ritz and Klaus Schulten},
  title={Architecture and Function of the Light Harvesting Apparatus of Purple Bacteria},
  journal=PNAS,
  volume={95},
  pages={5935-5941},
  year=1998,
  note={},
  tbreference={259},
  tbstatus={Published.},
  annote={Invited review.}
}

@article{BAIL98,
  author={Michael Bailey and Klaus Schulten and John E. Johnson},
  title={The Use of Solid Physical Models for the Study of Macromolecular Assembly},
  journal=COSB,
  volume=8,
  pages={202-208},
  year=1998,
  note={},
  tbreference={260},
  tbstatus={Published.},
  annote={}
}

@article{WRIG98A,
  author={Willy Wriggers and Klaus Schulten},
  title={Nucleotide-dependent movements of the kinesin motor domain predicted by simulated annealing},
  journal=BJ,
  volume=75,
  pages={646-661},
  year=1998,
  note={},
  tbreference={258},
  tbstatus={Published.},
  annote={}
}

@article{LU98,
  author={Hui Lu and Barry Isralewitz and Andre Krammer and Viola Vogel and Klaus Schulten},
  title={Unfolding of Titin Immunoglobulin Domains by Steered Molecular Dynamics Simulation},
  journal=BJ,
  volume=75,
  pages={662-671},
  year={1998},
  note={},
  tbreference={265},
  tbstatus={Published.},
  annote={}
}

@article{HU98A,
  author={Xiche Hu and Klaus Schulten },
  title={A Model for the Light-Harvesting Complex {I (B875)} of {{\em Rhodobacter sphaeroides}}},
  journal=BJ,
  volume=75,
  pages={683-694},
  year={1998},
  note={},
  tbreference={263},
  tbstatus={Published.},
  annote={}
}

@incollection{IZRA98,
  author={Sergei Izrailev and Sergey Stepaniants and Barry Isralewitz and Dorina Kosztin and Hui Lu and Ferenc Molnar and Willy Wriggers and Klaus Schulten},
  title={Steered Molecular Dynamics},
  booktitle={Computational Molecular Dynamics: Challenges, Methods, Ideas},
  series={Lecture Notes in Computational Science and Engineering},
  volume=4,
  publisher={Springer-Verlag},
  address={Berlin},
  editor={P. Deuflhard and J. Hermans and B. Leimkuhler and A. E. Mark and S. Reich and R. D. Skeel},
  pages={39-65},
  year={1998},
  note={},
  tbreference={255},
  tbstatus={Published.},
  annote={}
}

@article{HUMP98,
  author={W. Humphrey and H. Lu and I. Logunov and H. J. Werner and K. Schulten },
  title={Three Electronic State Model of the Primary Phototransformation of Bacteriorhodopsin},
  journal=BJ,
  volume=75,
  pages={1689-1699},
  year={1998},
  note={},
  tbreference={266},
  tbstatus={Published.},
  annote={}
}

@incollection{BENN98,
  author={Michal Ben-{N}un and Ferenc Molnar and Hui Lu and James C. Phillips and Todd J. {Mart\'{\i}nez} and Klaus Schulten},
  title={Quantum Dynamics of Retinal's Femtosecond Photoisomerization in Bacteriorhodopsin},
  booktitle={{Faraday Discussions, No. 110}},
  publisher={Faraday Publications},
  address={},
  editor={},
  pages={447-462},
  month={December},
  year=1998,
  note={},
  tbreference={262},
  tbstatus={Published.},
  annote={The "Faraday Discussions" homepage is http://www.rsc.org/faraday.}
}

@book{ZELL98,
 author         = {Michael Zeller},
 title          = {Topologieerhaltende Neuronale Netzwerke in der Robotik},
 publisher      = {Pro Universitate Verlag GmbH},
 address        = {Sinzheim},
 series         = {Reihe Robotik},
 year           = {1998},
 note           = {ISBN 3-932490-34-7}
 }

@article{WRIG98C,
  author={Willy Wriggers and Ronald A. Milligan and Klaus Schulten and J. Andrew McCammon},
  title={Self-Organizing Neural Networks Bridge the Biomolecular Resolution Gap},
  journal=JMB,
  year=1998,
  volume=284,
  pages={1247--1254},
  note={},
  tbreference={273},
  tbstatus={Published.},
  annote={}
}

@incollection{PHIL98,
  author={James C. Phillips and Robert Brunner and Aritomo Shinozaki and Milind Bhandarkar and Neal Krawetz and Laxmikant Kal{\'e} and Robert D. Skeel and Klaus Schulten},
  title={Avoiding Algorithmic Obfuscation in a Message-Driven Parallel {MD} Code},
  booktitle={{Computational Molecular Dynamics: Challenges, Methods, Ideas}},
  series={Lecture Notes in Computational Science and Engineering},
  publisher={Springer-Verlag},
  address={},
  editor={P. Deuflhard and J. Hermans and B. Leimkuhler and A. Mark and S. Reich and R. D. Skeel},
  pages={472--482},
  volume=4,
  month={November},
  year=1998,
  note={},
  tbreference={256},
  tbstatus={Published.},
  annote={This work was supported in part by NIH Grant P41RR05969 and NSF Grants BIR-9318159.}
}

@article{CORY98,
  author={Marshall G. Cory and Michael C. Zerner and Xiche Hu and Klaus Schulten},
  title={Electronic Excitations in Aggregates of Bacteriochlorophylls},
  journal=JPCB,
  volume={102},
  number={39},
  pages={7640--7650},
  year=1998,
  note={},
  tbreference={269},
  tbstatus={Published.},
  annote={}
}

@inproceedings{RITZ98A,
  author={Thorsten Ritz and Ana Damjanovi\'c and Klaus Schulten},
  title={Light-Harvesting and Photoprotection by Carotenoids: {S}tructure-Based Calculations for Photosynthetic Antenna Systems},
  booktitle={Photosynthesis: {M}echanisms and Effects ({P}roceedings of the {XIth} International Congress on Photosynthesis)},
  editor={G. Garab},
  volume=1,
  pages={487-490},
  month={},
  year=1998,
  address={Dordrecht},
  publisher={Kluwer Academic Publications},
  note={},
  tbreference={271},
  tbstatus={Published.},
  annote={}
}

@techreport{TZON97,
  author={Svilen Tzonev and Joseph Malpeli and Klaus Schulten},
  title={A three-dimensional model of the morphogenesis of the Rhesus lateral geniculate nucleus},
  type={{Beckman Institute Technical Report}},
  institution={University of Illinois},
  year=1998,
  tbreference={257},
  tbstatus={Under revision.},
  note={},
  annote={This article was accepted to the Journal of computational neuroscience (Kluwer Academic Publishers) and sent back for revisions, but was never revised.  Therefore, we include it in this bibliography as a technical report.}
}


%%%%%%%%%%%1999%%%%%%%%%%


@inproceedings{BHAN99,
  author={Milind Bhandarkar and Gila Budescu and William F. Humphrey and Jesus A. Izaguirre and Sergei Izrailev and Laxmikant V. Kal\'e and Dorina Kosztin and Ferenc Molnar and James C. Phillips and Klaus Schulten},
  title={{BioCoRE}: {A} Collaboratory for Structural Biology},
  booktitle={Proceedings of the {SCS} International Conference on Web-Based Modeling and Simulation},
  address={San Francisco, California},
  editor={Agostino G. Bruzzone and Adelinde Uchrmacher and Ernest H. Page},
  publisher={},
  year=1999,
  volume={},
  pages={242-251},
  note={},
  annote={URL: http://cpsi4.dibe.unige.it/~websim;  the paper has been assigned a code 5427.8638},
  tbstatus={Published.},
  tbreference={272}
}

@article{KOSZ99,
  author={Dorina Kosztin and Sergei Izrailev and Klaus Schulten},
  title={Unbinding of Retinoic Acid from its Receptor Studied by Steered Molecular Dynamics},
  journal=BJ,
  volume=76,
  pages={188-197},
  year=1999,
  note={},
  tbreference={270},
  tbstatus={Published.},
  annote={}
}

@article{KRAM99,
  author={Andr\'{e} Krammer and Hui Lu and Barry Isralewitz and Klaus Schulten and Viola Vogel},
  title={Forced Unfolding of the Fibronectin Type {III} Module Reveals a Tensile Molecular Recognition Switch},
  journal=PNAS,
  volume=96,
  pages={1351-1356},
  year=1999,
  note={},
  tbreference={277},
  tbstatus={Published.},
  annote={}
}

@article{KAUF99,
  author={David Kaufman and Ioan Kosztin and Klaus Schulten},
  title={Expansion Method for Stationary States of Quantum Billiards},
  journal=AJP,
  volume=67,
  pages={133-141},
  year=1999,
  note={},
  tbreference={267},
  tbstatus={Published.},
  annote={}
}

@article{DAMJ99,
  author={Ana Damjanovi\'{c} and Thorsten Ritz and Klaus Schulten},
  title={Energy Transfer Between Carotenoids and Bacteriochlorophylls in a Light Harvesting Protein},
  journal=PRE,
  volume=59,
  pages={3293-3311},
  year={1999},
  note={},
  tbreference={264},
  tbstatus={Published.},
  annote={}
}

@article{WRIG99,
  author={Willy Wriggers and Klaus Schulten},
  title={Investigating a Back Door Mechanism of Actin Phosphate Release by Steered Molecular Dynamics},
  journal=PRO,
  volume=35,
  pages={262-273},
  year={1999},
  note={},
  tbreference={274},
  tbstatus={Published.},
  annote={}
}

@inproceedings{FORS99,
  author={Christian V. Forst and Klaus Schulten},
  title={Evolution of Metabolisms: {A} New Method for the Comparison of Metabolic Pathways},
  booktitle={Proceedings of the Third Annual International Conference on Computational Molecular Biology},
  address={Lyon, France},
  publisher={ACM Press, New York},
  editor={Sorin Istrail and Pavel Pevzner and Michael Waterman},
  year=1999,
  pages={174-180},
  note={},
  tbreference={280},
  tbstatus={Published.},
  annote={}
}

@article{LU99,
  author={Hui Lu and Klaus Schulten},
  title={Steered Molecular Dynamics Simulations of Force-induced Protein Domain Unfolding},
  journal=PRO,
  volume=35,
  pages={453-463},
  year=1999,
  note={},
  tbreference={279},
  tbstatus={Published.},
  annote={}
}

@article{GULL99,
  author={Justin Gullingsrud and Rosemary Braun and Klaus Schulten},
  title={Reconstructing Potentials of Mean Force Through Time Series Analysis of Steered Molecular Dynamics Simulations},
  journal=JCMP,
  volume={151},
  pages={190-211},
  year=1999,
  note={},
  tbreference={275},
  tbstatus={Published.},
  annote={Special Issue on Computational Biophysics.}
}

@article{KALE99,
  author={Laxmikant Kal\'e and Robert Skeel and Milind Bhandarkar and Robert Brunner and Attila Gursoy and Neal Krawetz and James Phillips and Aritomo Shinozaki and Krishnan Varadarajan and Klaus Schulten},
  title={{NAMD2: Greater} Scalability for Parallel Molecular Dynamics},
  journal=JCMP,
  volume={151},
  pages={283-312},
  year=1999,
  note={},
  tbreference={276},
  tbstatus={Published.},
  annote={Special Issue on Computational Biophysics;  The code "KALE98" is indexed "B" to avoid conflicts with other papers by prof. Kale (see group.bib).}
}

@article{SCHL99,
  author={Tamar Schlick and Robert Skeel and Axel Br\"unger and Laxmikant Kal\'e and John A. {Board Jr.} and Jan Hermans and Klaus Schulten},
  title={Algorithmic Challenges in Computational Molecular Biophysics},
  journal=JCMP,
  year=1999,
  volume={151},
  pages={9-48},
  note={},
  tbreference={278},
  tbstatus={Published.},
  annote={Special Issue on Computational Biophysics}
}

@article{LU99A,
  author={Hui Lu and Klaus Schulten},
  title={Steered Molecular Dynamics Simulation of Conformational Changes of Immunoglobulin Domain {I27} Interpret Atomic Force Microscopy Observations},
  journal=CP,
  volume=247,
  pages={141--153},
  year=1999,
  note={},
  tbreference={281},
  tbstatus={Published.},
  annote={}
}

@article{KOSZ99A,
  author={Dorina Kosztin and Richard Gumport and Klaus Schulten},
  title={Probing the role of structural water in a duplex oligodeoxyribonucleotide containing a water-mimicking base analogue},
  journal=NAR,
  volume={27},
  number={17},
  pages={3550-3556},
  year={1999},
  note={},
  tbreference={282},
  tbstatus={Published.},
  annote={}
}

@article{FORS99B,
  author={Christian Forst and Klaus Schulten},
  title={Evolution of Metabolisms: {A} new Method for the Comparison of Metabolic Pathways using Genomics Information},
  journal={Journal of Computational Biology},
  volume=6,
  pages={343-360},
  year=1999,
  note={},
  tbreference={289},
  tbstatus={Published.},
  annote={}
}

@article{IZRA99,
  author={Sergei Izrailev and Antony R. Crofts and Edward A. Berry and Klaus Schulten},
  title={Steered Molecular Dynamics Simulation of the {Rieske} Subunit Motion in the Cytochrome~$bc_1$ Complex},
  journal=BJ,
  volume=77,
  pages={1753--1768},
  year=1999,
  note={},
  tbreference={283},
  tbstatus={Published.},
  annote={}
}

@article{MARS99,
  author={Piotr E. Marszalek and Hui Lu and Hongbin Li and Mariano Carrion-Vazquez and Andres F. Oberhauser and Klaus Schulten and Julio M. Fernandez},
  title={Mechanical unfolding intermediates in titin modules},
  journal=NAT,
  volume=402,
  pages={100--103},
  year={1999},
  note={},
  tbreference={286},
  tbstatus={Published.},
  annote={}
}

@article{BALA99,
  author={Alexander Balaeff and L. Mahadevan and Klaus Schulten},
  title={Elastic rod model of a {DNA} loop in the {\it lac} operon},
  journal=PRL,
  volume=83,
  number=23,
  pages={4900-4903},
  year=1999,
  note={},
  tbreference={290},
  tbstatus={Published.},
  annote={Prof. Mahadevan prefers to be cited as "L. Mahadevan" rather than under his full name Lakshminarayan; The paper was published on December 6}
}

@inproceedings{MOFF99,
  author={K. Moffat and {J.-P.} Changeux and D. M. Crothers and H. Grubmueller and G. U. Nienhaus and M. U. Palma and F. G. Parak and K. Schulten and A. Warshel},
  title={Group Report: {How} Does Complexity Lead to an Apparently Simple Function?},
  booktitle={Simplicity and Complexity in Proteins and Nucleic Acids},
  publisher={Dahlem University Press},
  address={Berlin},
  editor={H. Frauenfelder and J. Deisenhofer and P. G. Wolynes},
  pages={255-280},
  year={1999},
  note={},
  tbreference={291},
  tbstatus={Published.},
  annote={Berlin, May 17-22, 1998}
}

@inproceedings{SCHU99,
  author={Klaus Schulten},
  title={From Simplicity to Complexity and Back:  {Function}, Architecture and Mechanism of Light Harvesting Systems in Photosynthetic Bacteria},
  booktitle={Simplicity and Complexity in Proteins and Nucleic Acids},
  publisher={Dahlem University Press},
  address={Berlin},
  editor={H. Frauenfelder and J. Deisenhofer and P. G. Wolynes},
  pages={227-253},
  year={1999},
  note={},
  tbreference={268},
  tbstatus={Published.},
  annote={Berlin, May 17-22, 1998}
}



%%%%%%%%%%%2000%%%%%%%%%%


@article{RITZ2000,
  author={Thorsten Ritz and Salih Adem and Klaus Schulten},
  title={A Model for photoreceptor-based magnetoreception in birds},
  journal=BJ,
  volume={78},
  number={2},
  pages={707-718},
  year={2000},
  note={},
  tbreference={287},
  tbstatus={Published.},
  annote={}
}

@article{TAJK2000,
  author={Emad Tajkhorshid and Jerome Baudry and Klaus Schulten and Sandor Suhai},
  title={Molecular dynamics study of the nature and origin of retinal's twisted structure in bacteriorhodopsin},
  journal=BJ,
  volume={78},
  number={2},
  pages={683-693},
  year={2000},
  note={},
  tbreference={285},
  tbstatus={Published.},
  annote={}
}

@article{BOAR2000,
  author={John Board and Klaus Schulten},
  title={The Fast Multipole Algorithm},
  journal=IEEECSE,
  volume={2},
  pages={56--59},
  year=2000,
  note={},
  tbreference={292},
  tbstatus={Published.},
  annote={}
}

@article{DAMJ2000,
  author={Ana Damjanovi\'c and Thorsten Ritz and Klaus Schulten},
  title={Excitation Energy Trapping by the Reaction Center of {{\em Rhodobacter sphaeroides}}},
  journal={Int.\ J.\ Quantum Chem.},
  volume={77},
  pages={139--151},
  year=2000,
  note={},
  tbreference={288},
  tbstatus={Published.},
  annote={}
}

@article{SHAR2000,
  author={Rajeev Sharma and Michael Zeller and Vladimir I. Pavlovic and Thomas S. Huang and Zion Lo and Stephen Chu and Yunxin Zhao and James C. Phillips and Klaus Schulten},
  title={Speech/Gesture Interface to a Visual-Computing Environment},
  journal={IEEE Computer Graphics and Applications},
  volume=20,
  pages={29-37},
  year={2000},
  note={},
  tbreference={294},
  tbstatus={Published.},
  annote={}
}

@article{LU2000,
  author={Hui Lu and Klaus Schulten},
  title={The Key Event in Force-Induced Unfolding of Titin's Immunoglobulin Domains},
  journal=BJ,
  volume=79,
  pages={51-65},
  year=2000,
  note={},
  tbreference={300},
  tbstatus={Published.},
  annote={}
}

@article{MOLN2000A,
  author={Ferenc Molnar and Michal Ben-Nun and Todd J. {Mart\'{\i}nez} and Klaus Schulten},
  title={Characterization of a Conical Intersection between the Ground and First Excited State for a Retinal Analog},
  journal={Journal of Molecular Structure (THEOCHEM)},
  volume={{WATOC} special issue, 506},
  pages={169-178},
  year=2000,
  note={},
  tbreference={293},
  tbstatus={Published.},
  annote={}
}

@incollection{LU2000A,
  author={Hui Lu and Andr{\'e} Krammer and Barry Isralewitz and Viola
Vogel and Klaus Schulten},
  title={Computer modeling of force-induced titin domain unfolding},
  booktitle={Elastic Filaments of the Cell},
  editor={Jerry Pollack and Henk Granzier},
  chapter=1,
  pages={143-162},
  year=2000,
  publisher={Kluwer Acaddemic/Plenum Publishers},
  address={New York, NY},
  note={},
  tbreference={284},
  tbstatus={Published.},
  annote={}
}

@article{SCHU2000,
  author={Klaus Schulten},
  title={Electron transfer: {Exploiting} Thermal Motion},
  journal=SCI,
  volume=290,
  pages={61-62},
  year=2000,
  note={},
  tbreference={297},
  tbstatus={Published.},
  annote={Invited article, published in the "Perspectives" section of "Science".}
}

@article{DAMJ2000A,
  author={Ana Damjanovi\'c and Thorsten Ritz and Klaus Schulten},
  title={Excitation Transfer in the Peridinin-Chlorophyll-Protein of {{\it Amphidinium carterae}}},
  journal=BJ,
  volume={79},
  pages={1695-1705},
  year=2000,
  note={},
  tbreference={296},
  tbstatus={Published.},
  annote={}
}

@article{KESS2000A,
  author={Amit Kessel and Klaus Schulten and Nir Ben-Tal},
  title={Calculations Suggest a Pathway for the Transverse Diffusion of a Hydrophobic Peptide Across a Lipid Bilayer},
  journal=BJ,
  volume={79},
  pages={2322-2330},
  year=2000,
  note={},
  tbreference={298},
  tbstatus={Published.},
  annote={}
}

@article{MOLN2000,
  author={Ferenc Molnar and Lawrence S. Norris and Klaus Schulten},
  title={Simulated Unbinding and Binding of Fatty Acid Substrates in the Cyclooxygenase Site of Prostaglandin {H$_{2}$} Synthase-1},
  journal={Progress in Reaction Kinetics and Mechanisms},
  volume={25},
  pages={263-298},
  year=2000,
  note={},
  tbreference={295},
  tbstatus={Published.},
  annote={}
}

@article{SCHU2000A,
  author={Klaus Schulten},
  title={To Students Contemplating Research in Biomolecular Modelling},
  journal={Journal of Molecular Graphics and Modeling},
  volume={18},
  pages={218-220},
  year=2000,
  note={},
  tbreference={299},
  tbstatus={Published.},
  annote={}
}
@article{RITZ2001,
  author={Thorsten Ritz and Klaus Schulten},
  title={Physik der {P}hotosynthese},
  journal={Physikalische Blaetter},
  volume={57(2)},
  pages={49-53},
  year=2001,
  note={},
  tbreference={306},
  tbstatus={Published.},
  annote={}
}

@article{BAUD2001,
  author={Jerome Baudry and Emad Tajkhorshid and Ferenc Molnar and James Phillips and Klaus Schulten},
  title={Molecular Dynamics Study of Bacteriorhodopsin and the Purple Membrane},
  journal=JPCB,
  volume={105(5)},
  pages={905-918},
  year=2001,
  note={Invited feature article.},
  tbreference={301},
  tbstatus={Published},
  annote={}
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%End of Published Papers%%%%%%%%%%%%%%%%%%%%%%




%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%Papers in Press%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% This section contains papers which are accepted for publications.
%% Records will be moved to the section "Published Papers" when they
%% appear in journals or books. In the "note" entry, we put the number
%% for the Beckman Institute Technical Report if the paper has one.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


@incollection{PHIL95,
  author={James Phillips and Klaus Schulten},
  title={Modeling {AFM} Tip Dynamics Through Diffusion in Time-Periodic Potentials},
  booktitle={NATO Advanced Research Workshop on Atomic Force Microscopy},
  series="NASD",
  editor={J. Rabe},
  publisher={Kluwer Academic Publishers},
  address={New York},
  year=1995,
  note={In press. [Beckman Institute Technical Report TB-95-03]},
  tbreference={197},
  tbstatus={In press.},
  tbtechrep={TB-95-03}
}

@article{RITZ2001A,
  author={Thorsten Ritz and Ana Damjanovi\'{c} and Klaus Schulten and {Jian-Ping} Zhang and Yasushi Koyama},
  title={Efficient Light Harvesting Through Carotenoids},
  journal={Photosynthesis Research},
  pages={},
  year=2001,
  note={In press.},
  tbreference={302},
  tbstatus={In press.},
  annote={}
}

@inproceedings{ISRA2001A,
  author={Barry Isralewitz and Jerome Baudry and Justin Gullingsrud and Dorina 
Kosztin and Klaus Schulten},
  title={Steered Molecular Dynamics Investigations of Protein Function},
  booktitle={Journal of Molecular Graphics and Modeling, {\rm vol.19, 2001; also in }{\it Protein Flexibility and Folding}, L. A. Kuhn and M. F. Thorpe, editors, {\it Biological Modeling Series}, Elsevier (In Press)},
  publisher={},
  address={},
  editor={},
  pages={},
  year={},
  note={},
  tbreference={303},
  tbstatus={In press.},
  annote={}
}
@inproceedings{STON2000,
  author={John Stone and Justin Gullingsrud and Klaus Schulten},
  title={A System for Interactive Molecular Dynamics},
  booktitle={2001 Symposium on Interactive 3D Graphics},
  publisher={ACM},
  address={},
  editor={},
  pages={},
  year={2001},
  note={In Press.},
  tbreference={304},
  tbstatus={In Press.},
  annote={This symposium will take place between March 19-21, 2001}
}


@article{FORS2001,
  author={Christian Forst and Klaus Schulten},
  title={Phylogenetic Analysis of Metabolic Pathways},
  journal={Journal of Molecular Evolution},
  pages={},
  year=2001,
  note={In Press.},
  tbreference={305},
  tbstatus={In Press.},
  annote={}
}


@article{ISRA2001,
  author={Barry Isralewitz and Mu Gao and Klaus Schulten},
  title={Steered Molecular Dynamics and Mechanical Functions of Proteins},
  journal=COSB,
  pages={},
  year={2001},
  note={Invited Article.},
  tbreference={307},
  tbstatus={In Press.},
  annote={}   
}

@article{GULL2001,
  author={Justin Gullingsrud and Dorina Kosztin and Klaus Schulten},
  title={Structural Determinants of {M}scl Gating Studied by Molecular 
Dynamics Simulations},
  journal=BJ,
  pages={},
  year=2001,
  note={In Press.},
  tbreference={308},
  tbstatus={In Press.},
  annote={}
}


%%%%%%%%%%%%%%%%%%%%%%%%%%End of Papers in Press%%%%%%%%%%%%%%%%%%%%%%%%


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%Submitted Papers%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% This section contains papers which are submitted for publications.
%% Records will be moved to the section "Papers in Press" when they
%% are accepted to publish. In the "note" entry, we put the number
%% for the Beckman Institute Technical Report if the paper has one.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


@article{HESS97,
  author={Ted Hesselroth and Klaus Schulten },
  title={Receptive Field and Feature Map Formation in the Primary Visual Cortex via {Hebbian} Learning with Inhibitory Feedback},
  journal=NC,
  pages={},
  year={},
  note={Submitted.},
  tbreference={},
  tbstatus={Submitted.},
  annote={}
}

@article{HESS97A,
  author={Ted Hesselroth and Klaus Schulten },
  title={The Dynamics of Image Processing by Feature Maps in the Primary Visual Cortex},
  journal=NC,
  pages={},
  year={},
  note={Submitted.},
  tbreference={},
  tbstatus={Submitted.},
  annote={}
}

@article{PHEN98,
  author={Jennifer Phend and Linsen Bai and Ferenc Molnar and Klaus Schulten},
  title={Ising Spins on Regular Bodies:  {A}nalytical Theory, Computer Simulation, and Application to Viral Infection, Fever and Vaccines},
  journal=AJP,
  volume={},
  pages={},
  year=1998,
  note={Submitted.},
  tbreference={},
  tbstatus={Submitted.},
  annote={}
}

@article{YANG98,
  author={Cheng Y. Yang and Klaus Schulten and Charles Pidgeon},
  title={Molecular Dynamics Simulations of Bile Salts and Immobilized Artifical Membranes},
  journal=JPC,
  volume={},
  pages={},
  year=1998,
  note={Submitted.},
  tbreference={},
  tbstatus={Submitted.},
  annote={}
}


@article{CRAI2001,
  author={ David Craig and Andr\'e Krammer and Klaus Schulten and 
Viola Vogel},
  title={Comparison of the early stages of forced unfolding of fibronectin type III modules},
  journal=PNAS,
  pages={},
  year={2001},
  note={Submitted.},
  tbreference={},
  tbstatus={Submitted.},
  annote={}
}



%%%%%%%%%%%%%%%%%%%%%%%%%%End of Submitted Papers%%%%%%%%%%%%%%%%%%%%%%%




%%%%%%%%%%%%%%%%%%%%%%%%%%Papers in Preparation%%%%%%%%%%%%%%%%%%%%%%%%%%
%%
%% This section contains papers which are currently being prepared for
%% publications by TB group members. Records will be moved to the section 
%% "Submitted Papers" when they are submitted to press.
%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


@article{WALL94,
  author={K. R. Wallace and Klaus Schulten},
  title={A Model of Cortical Processing During Motor Learning},
  note={Under revision. [Beckman Institute Technical Report TB-94-11].},
  journal=BC,
  annote={Ken likes his citation to read 'K. R. Wallace' and not 'Ken'},
  tbtechrep={TB-94-11},
  tbstatus={In preparation.},
  tbreference={}
}

@article{LOGU95B,
  author={Ilya Logunov and Klaus Schulten},
  title={Quantum Chemistry -- Molecular Dynamics Study of the Optical Spectrum of Bacteriorhodopsin},
  journal=JPC,
  note={Under revision.  [Beckman Institute Technical Report TB-95-24].},
  tbstatus={In preparation.},
  techrep={TB-95-24},
  tbreference={},
  year ={}
}

@article{RITZ2000B,
  author={Thorsten Ritz and Ana Damjanovi\'{c} and Richard Cogdell and Thomas Gillbro and Klaus Schulten},
  title={Carotenoid-Chlorophyll Transfer in {LH2} from {{\em Rhodopseudomonas 
acidophila}}},
  journal=JPC,
  year=2000,
  tbstatus={In preparation.}
}

@article{HU2000,
  author={Xiche Hu and Thorsten Ritz and Ana Damjanovi\'{c} and Klaus Schulten},
  title={Photosynthetic Apparatus of Purple Bacteria},
  journal={Quart.~Rev.~Biophys.},
  year=2000,
  note={In preparation},
  tbstatus={In preparation.}
}

%%%%%%%%%%%%%%%%%%%%%%%%%%End of Papers in Preparation%%%%%%%%%%%%%%%%%%%%%%%



%%%%%%%%%%%%%%%%%%%%%%%%%%%%%Software Manuals%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% This section contains software manuals.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


@techreport{BANK91,
  author={Brad Banko and Helmut Heller},
  title={User Manual for {EGO} --- {R}elease 1.1},
  institution={University of Illinois},
  type={Beckman Institute Technical Report},
  number={TB-92-07},
  year=1991,
  tbtechrep={TB-92-07},
  tbreference={0}
}

%%BANK91-LONG refers to the same document as BANK91, but has more information.
@manual{BANK91-LONG,
  author={Brad Banko and Helmut Heller},
  title={User Manual for {EGO} --- {R}elease 1.1},
  organization={Theoretical Biophysics Group at the University of Illinois at Urbana-Champaign, Beckman Institute},
  address={405~N.~Mathews Ave., Urbana, IL~61801, U.S.A.},
  year=1991,
  note={[Beckman Institute Technical Report TB-92-07]},
  tbtechrep={TB-92-07},
  tbreference={0}
}

@techreport{HUMP94,
  author={William Humphrey and Andrew Dalke},
  title={{VMD} User Guide ({Version} 0.94)},
  institution={University of Illinois},
  type={Beckman Institute Technical Report},
  number={TB-94-07},
  tbreference={0},
  tbtechrep={TB-94-07},
  year=1994
}

@manual{HUMP94-LONG,
  author={William Humphrey and Andrew Dalke},
  title={{VMD} User Guide ({Version} 0.94)},
  institution={Theoretical Biophysics Group at the University of Illinois at Urbana--Champaign, Beckman Institute},
  address={405~N.~Mathews Ave., Urbana, IL~61801, U.S.A.},
  year=1994,
  note={[Beckman Institute Technical Report TB-94-07].},
  tbreference={0},
  tbtechrep={TB-94-07}
}
  
@manual{MDMAN94,
  author={Theoretical Biophysics},
  title={How to Use Program {MD}},
  institution={University of Illinois at Urbana--Champaign},
  address={Beckman Institute, 405~N.~Mathews Ave., Urbana, IL~61801, U.S.A.},
  year=1994,
  tbreference={0}
}


%%%%%%%%%%%%%%%%%%%%%%%%%End of Software Manuals%%%%%%%%%%%%%%%%%%%%%%%%




%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%Others%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% The following items are internal reports, papers related to the group
%% and papers in preparation. Never put them in the main publication list.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


@unpublished{CAMP93a,
  author={Tarcisio Campos and Klaus Schulten},
  title={Connectionist Modelling of Arm Kinematics Using Visual Information},
  note={In preperation},
  tbreference={0}
}

@incollection{CAMP93b,
  author={Tarcisio Campos and Klaus Schulten},
  title={Learning Multiple Arm Postures of a Real Arm Robot},
  booktitle={Intelligent Engineering Systems Through Artificial Neural Networks, {ANNIE-92}},
  editor={L. I. Burke and Y. C. Shin and C. H. Dagli},
  volume=2,
  year=1992,
  pages={797-802},
  publisher={ASME Press},
  address={New York},
  tbstatus={pub},
  tbreference={0},
  annote={Although this has been published, we do not wish to include it in the main list of publications.}
}

@techreport{HERZ93,
  author={Andreas V. M. Herz},
  title={Global Analysis of Recurrent Neural Networks},
  institution={University of Illinois},
  type={Beckman Institute Technical Report},
  number={TB-93-12},
  year=1993,
  tbtechrep={TB-93-12},
  tbreference={0}
}

@techreport{HESK93a,
  author={Tom Heskes},
  title={On {F}okker-{P}lank Approximations of On-Line Learning Processes},
  institution={University of Illinois},
  type={Beckman Institute Technical Report},
  number={TB-93-14},
  year=1993,
  tbtechrep={TB-93-14},
  tbreference={0}
}

@incollection{HESK93b,
  author={Tom Heskes},
  title={Stochastics of On-Line Backpropagation},
  booktitle={Proceedings of the European Symposium on Artificial Neural Networks},
  year=1994,
  pages={223-228},
  tbtechrep={TB-93-11},
  tbreference={0}
}

@article{OBY-93,
  author={Klaus Obermayer and Gary G. Blasdel},
  title={Geometry of Orientation and Ocular Dominance Columns in Monkey Striate Cortex},
  journal=JN,
  pages={4114--4129},
  year=1993,
  volume=13,
  tbstatus={pub},
  tbreference={0},
  annote={The early version of the paper was titled `Development of Orientation and Ocular Dominance Columns and Dimension Reducing Mappings: A Comparison between Theory and Experiment'.  That version was rejected by a journal, and the paper was revised and resubmitted to J. Neuroscience under a new title and without KS as an author.}
}

@techreport{LOFT91,
  author={Richard Loft and Klaus Schulten and Andreas Windemuth},
  title={Slicewise {CM} {FORTRAN} Kernel for the Molecular Dynamics Software Package on the {C}onnection {M}achine},
  year=1991,
  institution={University of Illinois},
  type={Beckman Institute Technical Report},
  number={TB-91-18},
  tbreference={0},
  tbtechrep={TB-91-18},
  annote={Andreas thinks that Loft's first name is Rich, not Richard, but isn't sure.}
}

@article{YE--94,
  author={Gordon Ye and Klaus Schulten},
  title={Magnetic Sensory Mechanisms in Birds and Other Animals},
  note={In Preparation.},
  tbreference={0}
}

@article{LEE-94,
  author={Daeyeol Lee and Joseph G. Malpeli},
  title={Global Form and Singularity: Modeling the Blind Spot's Role in Lateral Geniculate Morphogenesis},
  journal=SCI,
  volume=263,
  pages={1292--1294},
  tbreference={0},
  year=1994
}

@techreport{HESK94,
  author={Tom Heskes and Wim Wiegerinck and Andrzej Komoda},
  title={Scaling Properties of On-line Learning with Momentum},
  year=1994,
  institution={University of Illinois},
  type={Beckman Institute Technical Report},
  number={TB-94-03},
  tbreference={0},
  tbtechrep={TB-94-03},
  annote={Submitted to International Conference on Neural Networks, Orlando, 1994}
}

@techreport{WIEG94,
  author={Wim Wiegerinck and Andrzej Komoda and Tom Heskes},
  title={Stochastics Dynamics of Learning with Momentum in Neural Networks},
  year=1994,
  institution={University of Illinois},
  type={Beckman Institute Technical Report},
  number={TB-94-04},
  tbreference={0},
  tbtechrep={TB-94-04},
  annote={Submitted to Journal of Physics A}
}

@techreport{REIC94,
  author={Sebastian Reich},
  title={Numerical Integration of Highly Oscillatory {H}amiltonian Systems Using Slow Manifolds},
  institution={University of Illinois},
  type={Beckman Institute Technical Report},
  number={TB-94-06},
  year=1994,
  tbreference={0},
  tbtechrep={TB-94-06}
}

@techreport{REIC94A,
  author = {Sebastian Reich},
  title = {Smoothed Dynamics of Highly Oscillatory Hamiltonian Systems},
  institution={University of Illinois},
  type={Beckman Institute Technical Report},
  number={TB-94-12},
  year=1994,
  note = {Preprint; also Reich, S., Molecular dynamics with soft constraints},
  tbreference={0},
  tbtechrep={TB-94-12},
  tbstatus={Submitted},
  annote = {submitted to Physica D - Phys. Rev. D ?}
}

@article{REIC95d,
  author = {Sebastian Reich},
  title = {Enhancing Energy Conserving Methods},
  year = 1995,
  note = {Submitted to BIT},
  tbstatus = {Submitted}
}

@phdthesis{BARS94A,
  author={Daniel Barsky},
  title={Diffusional Effects in Magnetic Resonance Imaging and Microscopy},
  year=1994,
  school={University of Illinois},
  type={Ph.\ {D}.\ Thesis},
  address={Urbana},
  month=May
}

@incollection{LeRS96,
   author = {Benedict J. Leimkuhler and Sebastian Reich and Robert D. Skeel},
   title = {Integration methods for molecular dynamics},
   booktitle = {Mathematical Approaches to Biomolecular Structure and Dynamics},
   publisher = {Springer-Verlag},
   pages = {161--185},
   editor = {Jill P. Mesirov and Klaus Schulten and De Witt Sumners},
   year = {1996},
   series = {IMA Volumes in Mathematics and its Applications},
   volume = 82
}

@article{IZAG98,
  author={Jesus Izaguirre and Sebastian Reich and Robert D. Skeel},
  title={Longer time steps for molecular dynamics},
  journal=JCP,
  pages={},
  note={Submitted.},
  tbreference={},
  tbstatus={Submitted.},
  annote={}
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%End of Others%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%Duplicate Entries%%%%%%%%%%%%%%%%%%%%%%%%%%

%% The papers in this section are already shown in the section
%% "Published Papers", but here they have old citation codes which are
%% not according to the rule described above (see the explanation in
%% section of "Published Papers"). The reason why we keep this is
%% for bibtex of the references in the old papers or proposals.
%% Please do NOT use any entries in this section from now on to
%% avoid any duplicate citation.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

@article{RITT90A,
  author={Klaus Obermayer and Helge Ritter and Klaus Schulten},
  title={Large-Scale Simulations of Self-Organizing Neural Networks on Parallel Computers: Application to Biological Modelling},
  journal=PA,
  volume=14,
  year=1990,
  pages={381--404},
  tbreference={133},
  tbstatus={pub}
}

@incollection{OBY-91B,
  author={Klaus Obermayer and Gary G. Blasdel and Klaus Schulten},
  title={A Neural Network Model for the Formation and for the Spatial Structure of Retinotopic Maps, Orientation- and Ocular Dominance Columns},
  booktitle={Artificial Neural Networks},
  publisher={Elsevier},
  address={Amsterdam},
  editor={Teuvo Kohonen and Kai M\"akisara and Olli Simula and Jari Kangas},
  year=1991,
  pages={505--511},
  tbreference={151},
  tbtechrep={TB-91-09}
}

@article{OBY-92C,
author={Klaus Obermayer and Gary G. Blasdel and Klaus Schulten},
title={Statistical-Mechanical Analysis of Self-Organization and Pattern Formation During the Development of Visual Maps},
journal=PRA,
volume=45, number=10, month=may,
pages = {7568--7589},
year=1992,
annote={May 15, 1992.  Early version had a different title: ``Statistical-Mechanical ... formation in the primary visual cortex of the macaque.''},
tbreference={167},
tbtechrep={TB-92-03},
tbstatus={pub}
}

@incollection{OBY-92D, 
  author={Klaus Obermayer and Klaus Schulten and Gary G. Blasdel},
  title={A Comparison Between a Neural Network Model for the Formation of Brain Maps and Experimental Data},
  booktitle={Advances in Neural Information Processing Systems~4},
  editor={D. S. Touretzky and R. Lippman},
  publisher={Morgan Kaufmann Publishers}, 
  pages={83-90},
  year=1992,
  tbreference={170},
  tbstatus={pub},
  tbtechrep={TB-91-01}
}

@article{VALM89,
  author={Markus van Almsick and Klaus Schulten},
  title={Mathematica: Mathematik auf {M}ikrocomputern},
  journal=MCM,
  volume={11},
  year=1989,
  pages={42--59},
  tbreference={112}
}

@article{TESC91,
  author={Klaus Schulten and Markus Tesch},
  title={Coupling of Protein Motion to Electron Transfer: Molecular Dynamics and Stochastic Quantum Mechanics Study of Photosynthetic Reaction Centers},
  journal=CP,
  pages	= {421--446},
  volume = 158,
  tbtechrep={TB-91-15},
  year	= 1991,
  tbreference={146}
}

@article{GROSS91,
  author={M. K. Grossjean and Michael F. Grossjean and Klaus Schulten and Paul Tavan},
  title={Semistochastic Approach to Many Electron Systems},
  journal=JCP,
  volume=97, number=3,
  month=aug,
  year=1992,
  pages = {1865--1875},
  tbstatus = {pub}, 
  tbreference={126}
}

@article{GROSS90,
  author={Michael F. Grossjean and Paul Tavan and Klaus Schulten},
  title={Quantum Chemical Vibrational Analysis of the Chromophore of Bacteriorhodopsin},
  journal=JPC,
  volume=94,
  year=1990,
  pages={8059--8069},
  tbreference={124}
}

@article{NELS94,
  author={Mark Nelson and William Humphrey and Attila Gursoy and Andrew Dalke
  and Laxmikant Kal{\'e} and Robert Skeel and Klaus Schulten and Richard Kufrin},
  title={{MDScope} -- A Visual Computing Environment for Structural Biology},
  journal=CPC,
  year=1995,
  volume=91,
  number={1, 2 and 3},
  pages={111-134},
  annote={[Beckman Institute Technical Report TB-94-18]; The entry duplicates NELS95A},
  tbreference={195},
  tbstatus={published},
  tbtechrep={TB-94-18}
}

@article{BISH95,
  author={Thomas C. Bishop and Klaus Schulten},
  title={Molecular Dynamics Study of Glucocorticoid Receptor--{DNA} Binding},
  journal=PRO,
  volume=24,
  number=1,
  pages={115-133},
  year=1996,
  tbreference={209},
  note={},
  annote={the entry duplicates BISH96},
  tbstatus={published},
  tbtechrep={TB-95-07}
}

@article{BISH94B,
  author={Thomas C. Bishop and Klaus Schulten},
  title={Molecular Dynamics Study of Glucocorticoid Receptor--{DNA} Binding},
  journal=PRO,
  volume=24,
  number=1,
  pages={115-133},
  year=1996,
  tbreference={209},
  note={},
  annote={the entry duplicates BISH96},
  tbstatus={published},
  tbtechrep={TB-95-07}
}

@article{KURR94,
  author={Christian Kurrer and Klaus Schulten},
  journal=PRE,
  year=1995,
  volume=51,
  number=6,
  pages={6213-6218},
  title={Noise-Induced Neuronal Oscillations},
  annote={[Beckman Institute Technical Report TB-93-16]; this paper is the same as KURR95},
  tbtechrep={TB-93-16},
  tbreference={194}
}

@article{CANF94A,
  author={J. M. Canfield and R. L. Belford and P. G. Debrunner and K. Schulten}, 
  title={A Perturbation Treatment of Oscillating Magnetic Fields in the Radical Pair Mechanism Using the {Liouville} Equation},
  journal=CP,
  year=1995,
  volume=195,
  pages={59-69},
  note={},
  techrep={},
  tbreference={205},
  annote = {the same as CANF95A}
}

@article{ERWI94B,
  author={Edgar Erwin and Klaus Obermayer and Klaus Schulten},
  title={Models of Orientation and Ocular Dominance Columns in the Visual Cortex: A Critical Comparison},
  journal=NC,
  year=1995,
  volume=7,
  pages={425-468},
  tbreference={191},
  tbtechrep={TB-94-08},
  annote={Technical report TB-94-08. Sumitted to "Neural Computation"; the entry duplicates ERWI95A}
}

@article{MART93,
  author={Thomas Martinetz and Klaus Schulten},
  title={Topology Representing Networks},
  journal=NNET,
  volume=7,
  number=3,
  pages={507--522},
  year=1994,
  tbreference={178},
  tbstatus={pub},
  tbtechrep={TB-93-04},
  annote={The original technical report is TB-93-04.  The first techreport title was ``Competitive {H}ebbian Rule Forms {D}elauny Triangulations, Perfect Topology Preserving Maps, and Discrete Models of Manifolds''.  The title when the paper was originally submitted was ``Competitive {H}ebbian Rule Forms Manifold Representing Networks''.  A new techreport might be made from the revised version.(?);   the entry duplicates MART94.}
}

@article{MART91,
  author={Thomas Martinetz and Klaus Schulten},
  title={A Neural Network for Robot Control: Cooperation Between Neural Units as a Requirement for Learning},
  journal=CEE, 
  annote={Special Issue on ``Neural Networks: Theory and Applications in Robotics and Manufacturing'';   the entry duplicates MART93A},
  volume=19,
  number=4,
  pages={315--332},
  year=1993,
  tbreference={148},
  tbstatus={press}
}

@inproceedings{MART91C,
  author={Thomas Martinetz and Klaus Schulten},
  title={A Neural Network with {H}ebbian-Like Adaptation Rules Learning Visuomotor Coordination of a {PUMA} Robot},
  booktitle={Proceedings of the {IEEE} International Conference on Neural Networks ({ICNN--93}), {S}an {F}rancisco},
  pages={820--825},
  year=1993,
  tbstatus={pub},
  tbreference={182},
  annote={Published in April 93.  The early draft of this paper was called ``Neural Network with {H}ebbian-Like Adaptation Rules Learning Control of a {PUMA} Robot'', and included J\"org A. Walter as an author, and was submitted to NIPS, but was not published;   the entry duplicates MART93C}
}

@incollection{SARK94,
  author={Kakali Sarkar and Klaus Schulten},
  title={Topology Representing Network in Robotics},
  booktitle={Models of Neural Networks},
  series={Physics of Neural Networks},
  volume=3,
  pages={281-302},
  year=1996,
  publisher={Springer--Verlag},
  address={New York},
  editor={J. Leo van Hemmen and Eytan Domany and Klaus Schulten},
  tbreference={183},
  note={},
  tbtechrep={TB-93-15},
  tbstatus={published},
  annote={the entry duplicates SARK96}
}

@incollection{SARK95,
  author={Kakali Sarkar and Klaus Schulten},
  title={Topology Representing Network in Robotics},
  booktitle={Models of Neural Networks},
  series={Physics of Neural Networks},
  volume=3,
  pages={281-302},
  year=1996,
  publisher={Springer--Verlag},
  address={New York},
  editor={J. Leo van Hemmen and Eytan Domany and Klaus Schulten},
  tbreference={183},
  note={},
  tbtechrep={TB-93-15},
  tbstatus={published},
  annote={the entry duplicates SARK96}
}

@article{HUMP93,
  author={William Humphrey and Ilya Logunov and Klaus Schulten and Mordechai Sheves},
  title={Molecular Dynamics Study of Bacteriorhodopsin and Artificial Pigments},
  journal={Biochemistry},
  volume=33,
  pages={3668--3678},
  year=1994,
  tbreference={185},
  tbtechrep={TB-93-09},
  annote={the entry duplicates HUMP94A}
}

@incollection{BISH94A,
  author={Thomas C. Bishop and Helmut Heller and Klaus Schulten},
  title={Molecular Dynamics on Parallel Computers: Applications for Theoretical Biophysics},
  booktitle={Toward Teraflop Computing and New Grand Challenge Applications},
  editor={Rajiv K. Kalia and Priya Vashishta},
  year=1995,
  pages={129-138},
  publisher={Nova Science Publishers, Inc., New York},
  note={},
  annote={the entry duplicates BISH95A},
  tbreference={188},
  tbstatus={published},
  tbtechrep={} 
}

@incollection{ERWI94A,
  author={Edgar Erwin and Klaus Obermayer and Klaus Schulten},
  title={A Critical Comparison of Models for Orientation and Ocular Dominance Columns in the Striate Cortex},
  booktitle={Advances in Neural Information Processing Systems 7},
  editor={G. Tesauro and D. Touretzky and T. Leen},
  publisher={MIT Press},
  address={Cambridge, Mass and London, England},
  year=1995,
  pages={93-100},
  annote={the entry duplicates ERWI95},
  tbreference={189}
}

@inproceedings{TZON94A,
  author={Svilen Tzonev and Joseph Malpeli and Klaus Schulten},
  title={Morphogenesis of the Lateral Geniculate Nucleus: How Singularities Affect Global Structure},
  booktitle={Advances in Neural Information Processing Systems 7},
  editor={G. Tesauro and D. Touretzky  and T. Leen},
  publisher={MIT Press},
  address={Cambridge, Mass and London, England},
  year=1995,
  pages={133-140},
  note={[Beckman Institute Technical Report TB-94-13]},
  annote={the entry duplicates TZON95},
  techrep={TB-94-13},
  tbreference={190},
}

@article{LOGU94,
  author={Ilya Logunov and William Humphrey and Klaus Schulten and Mordechai Sheves},
  title={Molecular Dynamics Study of the 13-{\it cis} Form ({bR}$_{548}$) of Bacteriorhodopsin and Its Photocycle},
  journal=BJ,
  year=1995,
  volume=68,
  pages={1270-1282},
  tbreference={192},
  tbtechrep={TB-94-20},
  annote={the entry duplicates LOGU95C}
}

@article{ZHOU94,
  author={Feng Zhou and Klaus Schulten},
  title={Molecular Dynamics Study of a Membrane--Water Interface},
  journal=JPC,
  year=1995,
  pages={2194--2208},
  volume=99,
  techrep={TB-94-11},
  tbreference={193},
  annote={the entry duplicates ZHOU95}
}

@article{SHIF91,
  author={Mark A. Shifman and Andreas Windemuth and Klaus Schulten and Perry L. Miller},
  title={Molecular Dynamics Simulation on a Network of Workstations Using a Machine-Indepen\-dent Parallel Programming Language},
  journal=CBR,
  volume=25,
  year=1992,
  pages={168--180},
  tbreference={157},
  annote={the entry duplicates SHIF92}
}

@incollection{ERWI91A,
  author={Edgar Erwin and Klaus Obermayer and Klaus Schulten},
  title={Formation of Dimension-Reducing Somatotopic Maps},
  booktitle={Proceedings of the Fourth Conference on Neural Networks and Parallel Distributed Processing},
  editor={Samir I. Sayegh},
  publisher={Indiana University at Fort Wayne},
  year=1992,
  pages={115--126},
  annote={The title of the lecture at the conference was ``Formation and Variability of Somatotopic Maps with Topological Mismatch'', but that is NOT the title of this article;  the entry duplixcates ERWI92},
  tbreference={158}
}

@book{RITT91A,
  author={Helge Ritter and Thomas Martinetz and Klaus Schulten},
  title={Textbook: Neural Computation and Self-Organizing Maps: An Introduction},
  publisher={Ad\-di\-son-Wesley},
  address={New York},
  edition={Revised {E}nglish},
  year=1992,
  tbreference={159},
  annote={the entry duplicates RITT92}
}

@article{NIED91,
  author={Christoph Niedermeier and Klaus Schulten},
  title={Molecular Dynamics Simulations in Heterogenous Dielectrica and {D}ebye-{H}\"uckel Media: {A}pplication to the Protein Bovine Pancreatic Trypsin Inhibitor},
  journal=MS,
  volume= 8,
  number= 6,
  pages	= {361-387},
  year	= {1992},
  keywords={BPTI},
  tbreference={142},
  annote={the entry duplicates NIED92}
}

@inproceedings{SCHU91,
  author={Klaus Schulten},
  title={Computational Biology on Massively Parallel Machines},
  booktitle={Parallel Computation --- {P}roceedings of the First International {ACPC} Conference, Salzburg, Austria},
  publisher={Springer},
  address={New York},
  year=1992,
  pages={391--400},
  tbreference={165},
  annote={the entry duplicates SCHU92}
}

@article{XU91,
  author={Dong Xu and Klaus Schulten},
  title={Coupling of Protein Motion to Electron Transfer in a Photosynthetic Reaction Center: Investigating the Low Temperature Behaviour in the Framework of the Spin-Boson Model}, 
  journal=CP,
  volume=182,
  pages={91--117},
  year=1994,
  tbreference={166},
  tbstatus={pub},
  tbtechrep={TB-91-16},
  annote={May 1, 1994 issue. Note the volume is 182(2,3);  the entry duplicates XU94}
}

@article{WALT91B,
  author={J\"org A. Walter and Klaus Schulten},
  title={Implementation of Self-Organizing Neural Networks for Visuo-Motor Control of an Industrial Robot},
  journal=IEEENN,
  volume=4, number=1, pages={86-95},
  year=1993,
  tbreference={168},
  tbstatus={pub},
  tbtechrep={TB-91-21},
  annote={Jan 1, 1993; the entry duplicates WALT93}
}

@article{SINH92,
  author={Amitabh B. Sinha and Klaus Schulten and Helmut Heller },
  title={Performance Analysis of a Parallel Molecular Dynamics Program},
  journal=CPC,
  year=1994,
  tbreference={174},
  tbstatus={published},
  tbtechrep={TB-92-13},
  volume=78,
  pages={265--278},
  annote={the entry duplicates SINH94}
}

@article{HESS92,
  author={Ted Hesselroth and Kakali Sarkar and P. Patrick van der Smagt and Klaus Schulten},
  title={Neural Network Control of a Pneumatic Robot Arm},
  journal=IEEESMC,
  volume=24,
  number=1,
  pages={28--37},
  year=1994,
  tbreference={175},
  tbstatus={press},
  tbtechrep={TB-92-15},
  annote={the entry duplicates HESS94}
}

@incollection{ERWI92C,
 author={Edgar Erwin and Klaus Obermayer and Klaus Schulten}, 
 title={A Comparison of Models of Visual Cortical Map Formation}, 
 booktitle={Computation and Neural Systems},
 editor={Frank H. Eeckman and James M. Bower},
 publisher={Kluwer Academic Publishers},
 chapter={60},
 pages={395-402},
 year=1993, 
 tbreference={180},
 tbtechrep={TB-92-16},
 tbstatus={pub},
 annote={the entry duplicates ERWI93}
}

@article{HUMP95A,
  author={Klaus Schulten and William Humphrey and Ilya Logunov and Mordechai Sheves and Dong Xu},
  title={Molecular Dynamics Studies of Bacteriorhodopsin's Photocycles},
  journal=IJC,
  year=1995,
  volume=35,
  pages={447-464},
  tbreference={210},
  tbstatus={published},
  annote={Invited publication; The entry duplicates SCHU95B and was put here after switching the authors' order}
}

@article{SCHU96A,
  author={Klaus Schulten and William Humphrey and Ilya Logunov and Mordechai Sheves and Dong Xu},
  title={Molecular Dynamics Studies of Bacteriorhodopsin's Photocycles},
  journal=IJC,
  year=1995,
  volume=35,
  pages={447-464},
  tbreference={210},
  tbstatus={published},
  annote={Invited publication; The entry duplicates SCHU95B}
}

@incollection{HU95A,
  author={Xiche Hu and Dong Xu and Kenneth Hamer and Klaus Schulten and J\"urgen Koepke and Hartmut Michel},
  title={Knowledge-Based Structure Prediction of the Light-Harvesting Complex {II} of {{\em Rhodospirillum molischianum}}},
  booktitle={Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding},
  publisher={American Mathematical Society},
  address={Providence, R.I.},
  editor={P. M. Pardalos and D. Shalloway and G. Xue},
  pages={97-122},
  year=1996,
  note={},
  tbreference={202},
  tbstatus={published},
  annote={the entry duplicates HU96}
}

@article{XU95D,
  author={Dong Xu and Charles Martin and Klaus Schulten},
  title={Molecular Dynamics Study of Early Picosecond Events in the Bacteriorhodopsin Photocycle: Dielectric Response, Vibrational Cooling and the {J, K} Intermediates},
  journal=BJ,
  year=1996,
  volume=70,
  number=1,
  pages={453-460},
  tbstatus={published.},
  tbreference={218},
  annote={The entry duplicates XU96}
}

@article{BARS91,
  author  = {Daniel Barsky and Benno P\"utz and Klaus Schulten},
  title   = {Exploiting Bi-Exponential Relaxation to Detect Capillaries in {MRI}},
  journal = MRM,
  note	= {Submitted. [Beckman Institute Technical Report TB-91-23]},
  tbtechrep={TB-91-23},
  tbreference={},
  tbstatus={submitted},
  annote={this publication has been replaced by BARS95}
}

@article{XU95E,
  author={Dong Xu and James Christopher Phillips and Klaus Schulten},
  title={Protein Response to External Electric Fields: Relaxation, Hysteresis, and Echo},
  journal=JPC,
  note={In press.[Beckman Institute Technical Report TB-95-09]},
  techrep={TB-95-09},
  tbstatus={In press.},
  tbreference={224},
  annote={The entry duplicates XU96A}
}

@article{NELS95B,
  author={Mark Nelson and William Humphrey and Attila Gursoy and Andrew Dalke and Laxmikant Kal{\'e} and Robert D. Skeel and Klaus Schulten},
  title={{NAMD} -- {A} Parallel, Object-Oriented Molecular Dynamics Program},
  journal=JSCA,
  year=1996,
  volume=10,
  pages={251-268},
  note={},
  techrep={},
  tbstatus={Published.},
  tbreference={226},
  annote={The entry duplicates NELS96}
}

@article{ZHOU95A,
  author={Feng Zhou and Klaus Schulten},
  title={Molecular Dynamics Study of the Activation of Phospholipase {$A_2$} on a Membrane Surface},
  journal=PRO,
  year=1996,
  volume=25,
  number=1,
  pages={12-27},
  note={},
  techrep={},
  tbstatus={Published.},
  tbreference={223},
  annote={The entry duplicates ZHOU96}
}

@inproceedings{SCHU95A,
  author={Klaus Schulten and Michael Zeller},
  title={Topology Representing Maps and Brain Function},
  booktitle={Nova Acta Leopoldina NF 72},
  editor={},
  publisher={Jahresversammlungsband},
  address={},
  year=1996,
  volume=72,
  number=294,
  pages={133-157},
  note={},
  annote={},
  tbstatus={Published},
  tbreference={217},
  annote={The entry duplicates SCHU96B}
}

@article{LOGU95A,
  author={Ilya Logunov and Klaus Schulten},
  title={Quantum Chemistry -- Molecular Dynamics  Study of the Dark Adaptation Process in Bacteriorhodopsin},
  journal=JACS,
  year=1996,
  volume=118,
  pages={9727--9735},
  note={},
  tbstatus={Published.},
  techrep={TB-95-23},
  tbreference={228},
  annote={The entry duplicates LOGU96}
}

@incollection{HU95B,
  author={Xiche Hu and Dong Xu and Kenneth Hamer and Klaus Schulten and J\"urgen Koepke and Hartmut Michel},
  title={Prediction of the Structure of an Integral Membrane Protein--the Light-Harvesting Complex {II} of {{\em Rhodospirillum molischianum}}},
  booktitle={Biological Membranes: A Molecular Perspective from Computation and Experiment},
  pages ={503-533},
  publisher={Birkh\"auser},
  address={Cambridge, MA},
  editor={K.M. Merz and B. Roux},
  tbstatus={Published},
  tbreference={203},
  annote={The entry duplicates HU96A},
  year = 1995
}

@article{BISH96a,
  author={Tom Connor Bishop and Dorina Kosztin and Klaus Schulten },
  title={How Hormone Receptor--{DNA} Binding Affects Nucleosomal {DNA}:  The Role of Symmetry},
  journal=BJ,
  volume=72,
  pages={2056--2067},
  year=1997,
  note={},
  tbreference={237},
  tbstatus={Published.},
  annote={The entry duplicates BISH97}
}

@article{BISH95B,
  author={Tom Connor Bishop and Dorina Kosztin and Klaus Schulten },
  title={How Hormone Receptor--{DNA} Binding Affects Nucleosomal {DNA}:  The Role of Symmetry},
  journal=BJ,
  volume=72,
  pages={2056--2067},
  year=1997,
  note={},
  tbreference={237},
  tbstatus={Published.},
  annote={The entry duplicates BISH97}
}

@article{BALA96,
  author={Alexander Balaeff and Mair E. A. Churchill and Klaus Schulten },
  title={Structure prediction of a complex between the chromosomal protein {HMG-D} and {DNA}},
  journal=PRO,
  pages={113-135},
  volume=30,
  number=1,
  year=1998,
  note={},
  tbreference={253},
  tbstatus={Published.},
  annote={This entry duplicates BALA98}
}

@article{BALA97,
  author={Alexander Balaeff and Mair E. A. Churchill and Klaus Schulten },
  title={Structure prediction of a complex between the chromosomal protein {HMG-D} and {DNA}},
  journal=PRO,
  pages={113-135},
  volume=30,
  number=1,
  year=1998,
  note={},
  tbreference={253},
  tbstatus={Published.},
  annote={This entry duplicates BALA98}
}

@article{IZRA96,
  author={Sergei Izrailev and Sergey Stepaniants and Manel Balsera and Yoshi Oono and Klaus Schulten },
  title={Molecular Dynamics Study of Unbinding of the Avidin-Biotin Complex},
  journal=BJ,
  volume=72,
  pages={1568-1581},
  year=1997,
  note={},
  tbreference={236},
  tbstatus={Published.},
  annote={This entry duplicates IZRA97}
}

@article{WRIG96,
  author={Willy Wriggers and Klaus Schulten },
  title={Protein Domain Movements: {D}etection of Rigid Domains and Visualization of Hinges in Comparisons of Atomic Coordinates},
  journal=PRO,
  volume=29,
  number=1,
  pages={1-14},
  year={1997},
  note={},
  tbreference={241},
  tbstatus={Published.},
  annote={This entry duplicates WRIG97}
}

@article{BARS95,
  author  = {Daniel Barsky and Benno P\"utz and Klaus Schulten},
  title = {Theory of Heterogeneous Relaxation in Compartmentalized Tissues},
  journal = MRM,
  volume = 37,
  pages = {666-675},
  year = 1997,
  note = {},
  tbtechrep={},
  tbreference={233},
  tbstatus={Published.},
  annote={This entry duplicates BARS97}
}

@article{BISH96B,
  author={Thomas C. Bishop and Robert D. Skeel and Klaus Schulten},
  title={Difficulties with Multiple Time Stepping and the Fast Multipole Algorithm in Molecular Dynamics},
  journal=JCC,
  pages={1785-1791},
  volume=18,
  year=1997,
  note={},
  tbreference={242},
  tbstatus={Published.},
  annote={This entry duplicates BISH97A}
}

@article{HUMP96A,
  author={William Humphrey and Ernst Bamberg and Klaus Schulten},
  title={Photoproducts of Bacteriorhodopsin Mutants: {A} Molecular Dynamics Study},
  journal=BJ,
  volume=72,
  pages={1347--1356},
  year={1997},
  note={},
  tbreference={234},
  tbstatus={Published},
  annote={This entry duplicates HUMP97}
}

@article{WRIG96A,
  author={Willy Wriggers and Klaus Schulten },
  title={Stability and Dynamics of {G}-actin: {B}ack Door Water Diffusion and Behavior of a subdomain {3/4} loop},
  journal=BJ,
  pages={},
  year={1997},
  note={In press.},
  tbreference={245},
  tbstatus={In press.},
  annote={This entry duplicates WRIG97A}
}

@incollection{SCHU96,
  author={Klaus Schulten and Hui Lu and Linsen Bai},
  title={Probing Protein Motion Through Temperature Echoes},
  booktitle={Physics of Biological Systems: From Molecules to Species},
  editor={Henrik Flyvbjerg and John Hertz and Mogens H. Jensen and Ole G. Mouritsen and Kim Sneppen},
  series={Lecture Notes in Physics},
  publisher={Springer},
  pages ={117-152},
  year=1997,
  note={},
  tbreference={221},
  tbstatus={Published.},
  annote={This entry duplicates SCHU97}
}

@article{ZELL96B,
  author={Michael Zeller and Rajeev Sharma and Klaus Schulten},
  title={Motion Planning of a Pneumatic Robot Using a Neural Network},
  journal={IEEE Control Systems Magazine},
  volume=17,
  pages={89-98},
  year={1997},
  note={},
  tbreference={235},
  tbstatus={Published.},
  annote={This entry duplicates ZELL97C}
}

@article{WRIG97B,
  author={Willy Wriggers and Klaus Schulten},
  title={Nucleotide-dependent movements of the kinesin motor domain predicted by simulated annealing},
  journal=BJ,
  pages={},
  year=1998,
  note={In press.},
  tbreference={},
  tbstatus={In press.},
  annote={This entry duplicates WRIG98A}
}

@article{HOFA97,
  author={Ivo Hofacker and Klaus Schulten },
  title={Oxygen and Proton Pathways in Cytochrome c Oxidase},
  journal=PRO,
  pages={100--107},
  year=1998,
  number=1,
  volume=30,
  note={},
  tbreference={252},
  tbstatus={Published.},
  annote={This entry duplicates HOFA98}
}

@article{WRIG97C,
  author={Willy Wriggers and Ernest Mehler and Felicia Pitici and Harel Weinstein and Klaus Schulten},
  title={Structure and Dynamics of Calmodulin in Solution},
  journal=BJ,
  volume={74},
  pages={1622--1639},
  year={1998},
  note={},
  tbreference={261},
  tbstatus={Published.},
  annote={This entry duplicates WRIG98B}
}

@article{HUMP96B,
  author={William Humphrey and Hui Lu and Ilya Logunov and Hans Joachim Werner and Klaus Schulten},
  title={Three Electronic State Model of the Primary Phototransformation of Bacteriorhodopsin},
  journal=BJ,
  pages={},
  year={1998},
  note={In press.},
  tbreference={266},
  tbstatus={In press.},
  annote={tbtechrep No. TB-96-09; this entry duplicates HUMP98}
}

@article{RITZ97,
  author={Thorsten Ritz and Xiche Hu and Ana Damjanovi\'c and Klaus Schulten},
  title={Excitons and Excitation Transfer in the Photosynthetic Unit of Purple Bacteria},
  journal={Journal of Luminescence},
  volume={76-77},
  pages={310--321},
  year={1998},
  note={},
  tbreference={254},
  tbstatus={Published.},
  annote={The article appears in the DPC `97 Proceedings being published in the journal; the entry duplicates RITZ98}
}

@incollection{STEP97,
  author={Sergei Izrailev and Sergey Stepaniants and Barry Isralewitz and Dorina Kosztin and Hui Lu and Ferenc Molnar and Willy Wriggers and Klaus Schulten},
  title={Steered Molecular Dynamics},
  booktitle={Computational Molecular Dynamics: Challenges, Methods, Ideas},
  series={Lecture Notes in Computational Science and Engineering},
  volume=4,
  publisher={Springer-Verlag},
  address={Berlin},
  editor={P. Deuflhard and J. Hermans and B. Leimkuhler and A. E. Mark and S. Reich and R. D. Skeel},
  pages={39-65},
  year={1998},
  note={},
  tbreference={255},
  tbstatus={Published.},
  annote={The entry duplicates IZRA98}
}

@incollection{STEP98,
  author={Sergei Izrailev and Sergey Stepaniants and Barry Isralewitz and Dorina Kosztin and Hui Lu and Ferenc Molnar and Willy Wriggers and Klaus Schulten},
  title={Steered Molecular Dynamics},
  booktitle={Computational Molecular Dynamics: Challenges, Methods, Ideas},
  series={Lecture Notes in Computational Science and Engineering},
  volume=4,
  publisher={Springer-Verlag},
  address={Berlin},
  editor={P. Deuflhard and J. Hermans and B. Leimkuhler and A. E. Mark and S. Reich and R. D. Skeel},
  pages={39-65},
  year={1998},
  note={},
  tbreference={255},
  tbstatus={Published.},
  annote={The entry duplicates IZRA98}
}

@article{HU97A,
  author={Xiche Hu and Klaus Schulten },
  title={A Model for the Light-Harvesting Complex {I (B875)} of {{\em Rhodobacter sphaeroides}}},
  journal=BJ,
  volume=75,
  pages={683-694},
  year={1998},
  note={},
  tbreference={263},
  tbstatus={Published.},
  annote={The entry duplicates HU98A}
}

@incollection{PHIL97A,
  author={James C. Phillips and Robert Brunner and Aritomo Shinozaki and Milind Bhandarkar and Neal Krawetz and Laxmikant Kal{\'e} and Robert D. Skeel and Klaus Schulten},
  title={Avoiding Algorithmic Obfuscation in a Message-Driven Parallel {MD} Code},
  booktitle={{Computational Molecular Dynamics: Challenges, Methods, Ideas}},
  series={Lecture Notes in Computational Science and Engineering},
  publisher={Springer-Verlag},
  address={},
  editor={P. Deuflhard and J. Hermans and B. Leimkuhler and A. Mark and S. Reich and R. D. Skeel},
  pages={472--482},
  volume=4,
  month={November},
  year=1998,
  note={},
  tbreference={256},
  tbstatus={Published.},
  annote={This work was supported in part by NIH Grant P41RR05969 and NSF Grants BIR-9318159;  the entry duplicates PHIL98}
}

@article{GULL98,
  author={Justin Gullingsrud and Rosemary Braun and Klaus Schulten},
  title={Reconstructing Potentials of Mean Force Through Time Series Analysis of Steered Molecular Dynamics Simulations},
  journal=JCMP,
  volume={151},
  pages={190-211},
  year=1999,
  note={},
  tbreference={275},
  tbstatus={Published.},
  annote={Special Issue on Computational Biophysics;  The entry duplicates GULL99}
}

@article{ZERN98,
  author={Marshall G. Cory and Michael C. Zerner and Xiche Hu and Klaus Schulten},
  title={Electronic Excitations in Aggregates of Bacteriochlorophylls},
  journal=JPCB,
  volume={102},
  number={39},
  pages={7640--7650},
  year=1998,
  note={},
  tbreference={269},
  tbstatus={Published.},
  annote={The entry duplicates CORY98}
}

@article{KOSZ98,
  author={Dorina Kosztin and Sergei Izrailev and Klaus Schulten},
  title={Unbinding of Retinoic Acid from its Receptor Studied by Steered Molecular Dynamics},
  journal=BJ,
  volume=76,
  pages={188-197},
  year=1999,
  note={},
  tbreference={270},
  tbstatus={Published.},
  annote={The entry duplicates KOSZ99}
}

@article{KAUF98,
  author={David Kaufman and Ioan Kosztin and Klaus Schulten},
  title={Expansion Method for Stationary States of Quantum Billiards},
  journal=AJP,
  volume=67,
  pages={133-141},
  year=1999,
  note={},
  tbreference={267},
  tbstatus={Published.},
  annote={The entry duplicates KAUF99}
}

@article{KALE98B,
  author={Laxmikant Kal\'e and Robert Skeel and Milind Bhandarkar and Robert Brunner and Attila Gursoy and Neal Krawetz and James Phillips and Aritomo Shinozaki and Krishnan Varadarajan and Klaus Schulten},
  title={{NAMD2: Greater} Scalability for Parallel Molecular Dynamics},
  journal=JCMP,
  volume={},
  pages={},
  year=1999,
  note={In press.},
  tbreference={276},
  tbstatus={In press.},
  annote={The code "KALE98" is indexed "B" to avoid conflicts with other two papers by prof. Kale (see group.bib); the entry duplicates KALE99.}
}

@article{DAMJ98,
  author={Ana Damjanovi\'c and Thorsten Ritz and Klaus Schulten},
  title={Energy Transfer Between Carotenoids and Bacteriochlorophylls in a Light Harvesting Protein},
  journal=PRE,
  volume=59,
  pages={3293--3311},
  year={1999},
  note={},
  tbreference={264},
  tbstatus={Published.},
  annote={The entry duplicates DAMJ99}
}

@article{WRIG98,
  author={Willy Wriggers and Klaus Schulten},
  title={Investigating a Back Door Mechanism of Actin Phosphate Release by Steered Molecular Dynamics},
  journal=PRO,
  volume=35,
  pages={262-273},
  year={1999},
  note={},
  tbreference={274},
  tbstatus={Published.},
  annote={The entry duplicates WRIG99}
}

@article{KOSZ95,
  author={Ioan Kosztin and Byron Faber and Klaus Schulten},
  title={Introduction to the Diffusion {M}onte {C}arlo Method},
  journal=AJP,
  volume=64,
  pages={633-644},
  year=1996,
  note={},
  tbreference={201},
  tbstatus={Published},
  annote={The entry duplicates KOSZ96}
}

@article{BALA98A,
  author={Alexander Balaeff and L. Mahadevan and Klaus Schulten},
  title={Elastic rod model of a {DNA} loop in the {\it lac} operon},
  journal=PRL,
  volume=83,
  number=23,
  pages={4900-4903},
  year=1999,
  note={},
  tbreference={290},
  tbstatus={Published.},
  annote={Prof. Mahadevan prefers to be cited as "L. Mahadevan" rather than under his full name Lakshminarayan;  The paper was published on December 6;  The entry duplicates BALA99}
}

@inproceedings{SCHU98,
  author={Klaus Schulten},
  title={From Simplicity to Complexity and Back:  {Function}, Architecture and Mechanism of Light Harvesting Systems in Photosynthetic Bacteria},
  booktitle={Simplicity and Complexity in Proteins and Nucleic Acids},
  publisher={Dahlem University Press},
  address={Berlin},
  editor={H. Frauenfelder and J. Deisenhofer and P. G. Wolynes},
  pages={},
  year={1998},
  note={In press.},
  tbreference={268},
  tbstatus={In press.},
  annote={Berlin, May 17-22, 1998; the entry duplicates SCHU99}
}

@article{BOAR99,
  author={John Board and Klaus Schulten},
  title={The Fast Multipole Algorithm},
  journal=IEEECSE,
  volume={2},
  pages={56--59},
  year=2000,
  note={},
  tbreference={292},
  tbstatus={Published.},
  annote={The entry duplicates BOAR2000}
}

@article{DAMJ99A,
  author={Ana Damjanovi\'c and Thorsten Ritz and Klaus Schulten},
  title={Excitation Energy Trapping by the Reaction Center of {{\em Rhodobacter sphaeroides}}},
  journal={Int.\ J.\ Quantum Chem.},
  volume={77},
  pages={139--151},
  year=2000,
  note={},
  tbreference={288},
  tbstatus={Published.},
  annote={The entry duplicates DAMJ2000}
}

@article{RITZ99,
  author={Thorsten Ritz and Salih Adem and Klaus Schulten},
  title={A Model for Vision-Based Magnetoreception in Birds},
  journal=BJ,
  volume={78},
  number={2},
  pages={707-718},
  year={2000},
  note={},
  tbreference={287},
  tbstatus={Published.},
  annote={The entry duplicates RITZ2000}
}

@article{TAJK99,
  author={Emad Tajkhorshid and Jerome Baudry and Klaus Schulten and Sandor Suhai},
  title={Molecular dynamics study of the nature and origin of retinal's twisted structure in bacteriorhodopsin},
  journal=BJ,
  volume={78},
  number={2},
  pages={683-693},
  year={2000},
  note={},
  tbreference={285},
  tbstatus={Published.},
  annote={The entry duplicates TAJK2000}
}

@article{MOLN99A,
  author={Ferenc Molnar and Michal Ben-Nun and Todd J. {Mart\'{\i}nez} and Klaus Schulten},
  title={Characterization of a Conical Intersection between the Ground and First Excited State for a Retinal Analog},
  journal={Journal of Molecular Structure (THEOCHEM)},
  volume={{WATOC} special issue, 506},
  pages={169-178},
  year=2000,
  note={},
  tbreference={293},
  tbstatus={Published.},
  annote={The entry duplicates MOLN2000A}
}

@incollection{LU99B,
  author={Hui Lu and Andr\'e Krammer and Barry Isralewitz and Viola Vogel and Klaus Schulten},
  title={Computer modeling of force-induced titin domain unfolding},
  booktitle={Elastic Filaments of the Cell},
  editor={Jerry Pollack and Henk Granzier},
  chapter=1,
  pages={143-162},
  year=2000,
  publisher={Kluwer Academic/Plenum Publishers},
  address={New York, NY},
  note={},
  tbreference={284},
  tbstatus={Published.},
  annote={The entry duplicates LU2000A}
}
@article{FORS99A,
  author={Christian Forst and Klaus Schulten},
  title={Phylogenetic Analysis of Metabolic Pathways},
  journal={Journal of Molecular Evolution},
  pages={},
  year=2000,
  note={In Press.},
  tbreference={305},
  tbstatus={In Press.},
  annote={The entry duplicates FORS2000}
}

@article{FORS2000,
  author={Christian Forst and Klaus Schulten},
  title={Phylogenetic Analysis of Metabolic Pathways},
  journal={Journal of Molecular Evolution},
  pages={},
  year=2001,
  note={In Press.},
  tbreference={305},
  tbstatus={In Press.},
  annote={ The entry duplicates FORS2001}
}

@article{RITZ2000C,
  author={Thorsten Ritz and Klaus Schulten},
  title={Physik der Photosynthese},
  journal={Physikalische Blaetter},
  pages={},
  year=2000,
  note={Submitted.},
  tbreference={},
  tbstatus={Submitted.},
  annote={ The entry duplicates RITZ2001}
}
@article{GULL2000,
  author={Justin Gullingsrud, Dorina Kosztin and Klaus Schulten},
  title={Structural Determinants of MscL Gating Studied by Molecular 
Dynamics Simulations},
  journal=BJ,
  pages={},
  year=2000,
  note={Submitted.},
  tbreference={},
  tbstatus={Submitted.},
  annote={The entry duplicates GULL2001}
}
@article{BAUD2000,
  author={Jerome Baudry and Emad Tajkhorshid and Ferenc Molnar and James Phillips and Klaus Schulten},
  title={Molecular Dynamics Study of Bacteriorhodopsin and the Purple Membrane},
  journal=JPC,
  pages={},
  year=2001,
  note={Invited feature article. In press.},
  tbreference={296},
  tbstatus={In press.},
  annote={The entry duplicates BAUD2001}
}

@article{RITZ2000A,
  author={Thorsten Ritz and Ana Damjanovi\'{c} and Klaus Schulten and {Jian-Ping} Zhang and Yasushi Koyama},
  title={Efficient Light Harvesting Through Carotenoids},
  journal={Photosynthesis Research},
  pages={},
  year=2001,
  note={In press.},
  tbreference={302},
  tbstatus={In press.},
  annote={ The entry duplicates RITZ2001A}
}

@inproceedings{ISRA2000,
  author={Barry Isralewitz and Jerome Baudry and Justin Gullingsrud and Dorina
Kosztin and Klaus Schulten},
  title={Steered Molecular Dynamics Investigations of Protein Function},
  booktitle={Journal of Molecular Graphics and Modeling, {S}upplement on Proceedings of a meeting on Protein
Flexibility and Folding },
  publisher={},
  address={},
  editor={},
  pages={},
  year={2001},
  note={In press.},
  tbreference={303},
  tbstatus={In press.},
  annote={The entry duplicates RITZ2001A}
}


%%%%%%%%%%%%%%%%%%%%%%%%%%End of Duplicate Entries%%%%%%%%%%%%%%%%%%%%%%%%


